Gene Information

Name : irp1D (CDCE8392_2035)
Accession : YP_005134566.1
Strain : Corynebacterium diphtheriae CDCE 8392
Genome accession: NC_016785
Putative virulence/resistance : Virulence
Product : Fe3+-siderophore ABC transporter ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : 3.6.3.34
Position : 2153792 - 2154595 bp
Length : 804 bp
Strand : -
Note : ABC-type sugar transport systems, ATPase components

DNA sequence : 
TTGTCCGCTCAACTCACTTCCCGTTCTCTTTCTTCAGGGTATGGGGTAGATCCCATTGTGAAAGATGTAACCCTATCGTT
TGAGTCCGGCAAGATTACGTCGATTGTCGGGCCGAATGGTTGCGGCAAGTCTACGTTTCTGCGGACCCTGGCGAGGTTGA
TTCGGCCTACAGCCGGTTCCGTTGAGCTGAATGGCAAGCCGCTGGGAGCCTATTCTTCGCGCGAGTTGGCAAAGCGGCTC
GGGCTACTTCCGCAGACACCGGTTGCGCCCGATGGAATCACCGTCGCTGACCTGGTAGGGCGAGGCCGCACGCCTTACCA
GGGAATTTTGGGTAGGTGGACTGCGTCCGACTACGACATCGTCGCCGAAGCGATGGCGTCCACCCAGGTGGCGGAACTGG
CAGATCGGAGCATCGAAGAGCTTTCCGGCGGCCAGCGGCAGCGCGTATGGATTGCGATGGCGCTCGCGCAGCAGACCGAC
GTATTGCTTCTCGACGAACCGACCACCTACCTCGACTTGAAACACCAGTTAGAAGTCCTGGATTTACTGACCGACCTCAA
TCAACGTCGTGGCACCACCATCATCATGGTGCTGCACGACCTGAATTTGGCCGCCCGCTACTCCGACAACCTCGTAGCTA
TGCGCGATGGTCGCTTGCATTCGGTGGGCAGGCCCGTCGACGTGCTCACGCAAGACCTCACCCGCGAGGCGTTTGACCTC
GAATCGCTCGTTATTACCGATCCTGTGTCAGGGCTGCCGACGGTGACTCCCATCGGCCGTCATCACACGCAACTAGTTCA
CTAG

Protein sequence : 
MSAQLTSRSLSSGYGVDPIVKDVTLSFESGKITSIVGPNGCGKSTFLRTLARLIRPTAGSVELNGKPLGAYSSRELAKRL
GLLPQTPVAPDGITVADLVGRGRTPYQGILGRWTASDYDIVAEAMASTQVAELADRSIEELSGGQRQRVWIAMALAQQTD
VLLLDEPTTYLDLKHQLEVLDLLTDLNQRRGTTIIMVLHDLNLAARYSDNLVAMRDGRLHSVGRPVDVLTQDLTREAFDL
ESLVITDPVSGLPTVTPIGRHHTQLVH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-66 53
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 1e-68 50
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 1e-68 50
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 3e-55 49
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 6e-56 47
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 7e-57 45
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 7e-57 45
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 7e-57 45
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 7e-57 45
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 9e-35 42
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 4e-52 41
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 4e-52 41
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 3e-52 41
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 3e-52 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
irp1D YP_005134566.1 Fe3+-siderophore ABC transporter ATP-binding protein BAC0164 Protein 2e-55 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
irp1D YP_005134566.1 Fe3+-siderophore ABC transporter ATP-binding protein VFG1042 Protein 2e-55 49
irp1D YP_005134566.1 Fe3+-siderophore ABC transporter ATP-binding protein VFG0925 Protein 1e-63 49