Gene Information

Name : irp1D (CDB402_1990)
Accession : YP_005128488.1
Strain : Corynebacterium diphtheriae INCA 402
Genome accession: NC_016783
Putative virulence/resistance : Virulence
Product : ABC-type Fe3+-siderophore transport system, ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : 3.6.3.34
Position : 2156912 - 2157721 bp
Length : 810 bp
Strand : -
Note : ABC-type sugar transport systems, ATPase components

DNA sequence : 
TTGTCCGCTCAACTTACTTCCCGTTCTCTTTCTTCTGGGTATGGGGCAGATCCCATTGTGAAAGATGTAACCCTGTCGTT
TGAGTCCGGCAAGATTACGTCGATTGTCGGGCCGAATGGTTGCGGCAAGTCAACGTTTCTGCGGACACTAGCGAGGTTGA
TTCGGCCTACAGCCGGTTCCGTTGAGCTGGATGGCAAGCCACTGGGAGCCTATTCTTCGCGCGAGTTGGCAAAGCGGCTC
GGGCTACTTCCGCAGACACCGGTTGCGCCCGATGGAATCACCGTCGCTGACCTGGTAGGGCGAGGCCGCACGCCTTACCA
GGGAATTTTGGGTAGGTGGACTGCGTCCGACTACGACATCGTCGCCGAAGCGATGGCGTCCACCCAGGTGGCGGAACTGG
CAGATCGGAGCATCGAAGAGCTTTCCGGCGGCCAGCGGCAGCGCGTATGGATTGCGATGGCGCTCGCGCAGCAGACCGAC
GTATTGCTTCTCGACGAACCGACCACCTACCTCGACTTGAAACACCAGTTAGAAGTCCTGGATTTACTGACCGACCTCAA
TCAACGTCGTGGCACCACCATCATCATGGTGCTGCACGACCTGAATTTGGCCGCCCGCTACTCCGACAACCTCGTAGCTA
TGCGCGATGGTCGCTTGCATTCGGTGGGCAGGCCCGTCGACGTGCTCACGCAAGACCTCACCCGCGAGGCGTTTGACCTC
GAATCGCTCGTTATTACCGATCCTGTGTCAGGGCTGCCGACGGTGACTCCCATCGGCCGTCATCACACGCAACTAGTCCA
TGAGATTTAA

Protein sequence : 
MSAQLTSRSLSSGYGADPIVKDVTLSFESGKITSIVGPNGCGKSTFLRTLARLIRPTAGSVELDGKPLGAYSSRELAKRL
GLLPQTPVAPDGITVADLVGRGRTPYQGILGRWTASDYDIVAEAMASTQVAELADRSIEELSGGQRQRVWIAMALAQQTD
VLLLDEPTTYLDLKHQLEVLDLLTDLNQRRGTTIIMVLHDLNLAARYSDNLVAMRDGRLHSVGRPVDVLTQDLTREAFDL
ESLVITDPVSGLPTVTPIGRHHTQLVHEI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 9e-67 54
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 4e-69 51
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 4e-69 51
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 2e-55 49
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-56 47
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 3e-57 45
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 3e-57 45
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 3e-57 45
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 3e-57 45
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 6e-35 42
cpfrc_01918 YP_003784318.1 hypothetical protein Not tested PiCp 7 Protein 1e-31 41
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-52 41
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 2e-52 41
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 2e-52 41
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-52 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
irp1D YP_005128488.1 ABC-type Fe3+-siderophore transport system, ATP-binding protein BAC0164 Protein 1e-55 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
irp1D YP_005128488.1 ABC-type Fe3+-siderophore transport system, ATP-binding protein VFG1042 Protein 1e-55 49
irp1D YP_005128488.1 ABC-type Fe3+-siderophore transport system, ATP-binding protein VFG0925 Protein 6e-64 49