Gene Information

Name : irp1B (CD241_2030)
Accession : YP_005126285.1
Strain : Corynebacterium diphtheriae 241
Genome accession: NC_016782
Putative virulence/resistance : Virulence
Product : ABC-type Fe3+-siderophore transport system, permease component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2153872 - 2154792 bp
Length : 921 bp
Strand : -
Note : -

DNA sequence :
ATGTTCGGCGTTCGCAGCATTACACCGGCCGAAGCTCTATCGGCGCTCGGTGGTGCTACCGACACCGTCGGTGAAGCTGC
AGCGTGGACTCGTATTCCACGCACGCTACTGGCGCTCTGCGCGGGTGCGGCACTCGCTACCTCAGGCACCGCTTTTCAGG
CTGTGACACGAAATCCACTGGCAGACCCTGGAATCTTCGGTGTTCTTGCGGGCGCGTCTCTCGCAGTGGTCATCAGCCTT
ACGTTCTTTAACGTCAGTCGCACGCTTCCGACCATGCTTATTGCGTCGGCGGGCGCTTTCGCTGCTGCGGTGTTTGTCTA
CAGTGTGGGCTCGATTGGTCGCGGCGGCGCCACACCGCTCAAGCTCGCGCTTTCCGGTGCTGCCACGGCTGCCGCTTTGT
CCAGCTTGACCAGCGCCATCCTGTTGCCCCGCGCCAATGTCATGGACGAGTTCCGCAATTGGCAGATTGGTTCCGTCAGC
GGTGCGCAGTGGGAATCGCTCGCGGTGGCGCTGCCGCTGCTTGGGCTCGGCTTCGCCATAGTGTTTCTCACCAGCAGTGG
CCTTAACGCCCTGTCCCTCGGCGATGATGTCGCCACCAGCTTGGGCATTAACCTCACTCGCACGCGGATCTTGGTCACGC
TCGGCGCAGTCTTGCTTTGCGGAACCGCCACGGCCGTCACCGGCCCGATTGCCTTCGTCGGGCTAATCGTTCCGCACGTC
CTGCGCCTACTGCTCGGCACGGACCACCGCATCCTAATCCCAGCAAGTGCGCTGGCAGGCGCCGTATTGCTGACACTCGC
AGACATCGCAGGACGCCTTCTTGGAGGCTCCTCCGAGATCGCCGTCGGCATTATCATGCCGTTCCTCGGCGCGCCACTGT
TCATCTGGATTGTGCGACAGACAAGGATGCGCGAACTATGA

Protein sequence :
MFGVRSITPAEALSALGGATDTVGEAAAWTRIPRTLLALCAGAALATSGTAFQAVTRNPLADPGIFGVLAGASLAVVISL
TFFNVSRTLPTMLIASAGAFAAAVFVYSVGSIGRGGATPLKLALSGAATAAALSSLTSAILLPRANVMDEFRNWQIGSVS
GAQWESLAVALPLLGLGFAIVFLTSSGLNALSLGDDVATSLGINLTRTRILVTLGAVLLCGTATAVTGPIAFVGLIVPHV
LRLLLGTDHRILIPASALAGAVLLTLADIAGRLLGGSSEIAVGIIMPFLGAPLFIWIVRQTRMREL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SPN23F_09540 YP_002510937.1 ferric siderophore ABC transporter permease Virulence PPI-1 Protein 2e-37 46
SP_1033 NP_345508.1 iron ABC transporter permease Virulence PPI-1 Protein 2e-37 46
fagA YP_005680309.1 hypothetical protein Not tested PiCp 1 Protein 1e-15 41
fagA YP_005682399.1 hypothetical protein Virulence PiCp 1 Protein 1e-15 41
fagA YP_003782432.1 integral membrane protein Virulence PiCp 1 Protein 1e-15 41
fagA YP_005684490.1 hypothetical protein Not tested PiCp 1 Protein 1e-15 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
irp1B YP_005126285.1 ABC-type Fe3+-siderophore transport system, permease component VFG0926 Protein 4e-24 43