Gene Information

Name : GU3_02035 (GU3_02035)
Accession : YP_005090914.1
Strain : Oceanimonas sp. GK1
Genome accession: NC_016745
Putative virulence/resistance : Virulence
Product : iron ABC transporter substrate binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 418907 - 419836 bp
Length : 930 bp
Strand : -
Note : COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin

DNA sequence : 
ATGACCGATTGCATTACTGCGTTTATCACCAGGTGTCTGCGGGCCGGGCTGGGAGGGCTGGCGCTGCTGGTGGTGCTGAC
GGCACTGCCGGCGAGCGGCCAGGAAAAATTCCGGGCGGTGACCACCTTTACCGTGATCGCCGACATGGCGCAAAACGTGG
CCGGCGAGGCTGCCGTGGTGGAGTCCATCACCAAGCCCGGTGCCGAGATCCACGAATACCAGCCCACCCCGGGCGACCTG
CTGCGCGCCCACGGCGCGCAGCTGATCCTGTCCAACGGCCTGAACCTGGAGCTGTGGTTCGAGCGTTTTTACCAGAACCT
GGGCCAGGTGCCCGAGGTGGTGGTGAGCAAGGGCATAGTGCCTATCAGCATTGATGACGGCCCCTACCGCGGCAAGCCCA
ACCCCCATGCCTGGATGTCGCCGGACAACGCCCTCATTTACGTCGACAACATTCTCGCCGCCTTTGTGAAATACGATTCG
GCCAACGCCGACACCTACCGGGCCAATGCCGAGGCCTACAAGGCGCGCATCATCGCCGACACCGCGCCCTTGCGGGCCCT
GTTTGCCCGCCTGCCCGCGCACCGGCGCTGGCTGGTGACCAGCGAAGGGGCTTTTTCCTACCTGGCCCGGGACTACGGCC
TGAAGGAGCTGTACCTGTGGCCGATCAATGCGGATCAGCAGGGCACGCCCCAGCAGGTGCGCCGGGTGATTGATACCGTG
CGTGAGCACCGCATTCCGGCGGTGTTCAGCGAAAGCACCATTTCCGACAAACCCGCCCGCCAGGTGGCCCGGGAAACCGG
CGCCCGTTATGGCGGTGTGCTTTACGTCGACTCCCTGAGTGAGCCGAACGGCCCGGTGCCCAGCTACCTCGACTTGTTGC
GGGTCACCTCCAGCACCATTGCGCACGGGCTGGCCGAGGGGCTGGAATGA

Protein sequence : 
MTDCITAFITRCLRAGLGGLALLVVLTALPASGQEKFRAVTTFTVIADMAQNVAGEAAVVESITKPGAEIHEYQPTPGDL
LRAHGAQLILSNGLNLELWFERFYQNLGQVPEVVVSKGIVPISIDDGPYRGKPNPHAWMSPDNALIYVDNILAAFVKYDS
ANADTYRANAEAYKARIIADTAPLRALFARLPAHRRWLVTSEGAFSYLARDYGLKELYLWPINADQQGTPQQVRRVIDTV
REHRIPAVFSESTISDKPARQVARETGARYGGVLYVDSLSEPNGPVPSYLDLLRVTSSTIAHGLAEGLE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 5e-95 73
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 5e-95 73
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 5e-95 73
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 4e-95 73
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 6e-95 73

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GU3_02035 YP_005090914.1 iron ABC transporter substrate binding protein BAC0349 Protein 3e-95 73
GU3_02035 YP_005090914.1 iron ABC transporter substrate binding protein BAC0439 Protein 2e-83 64

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GU3_02035 YP_005090914.1 iron ABC transporter substrate binding protein VFG0525 Protein 2e-95 73