Gene Information

Name : GU3_02025 (GU3_02025)
Accession : YP_005090912.1
Strain : Oceanimonas sp. GK1
Genome accession: NC_016745
Putative virulence/resistance : Virulence
Product : ABC-3 protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 417176 - 418030 bp
Length : 855 bp
Strand : -
Note : COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components

DNA sequence :
ATGGCGGCCCTGCTTGAACCCTTTGGTTACGGCTACATGGTCAACGCCATCTGGGTGTCGGCGCTGGTGGGCGGCGTGTG
TGCCTTTCTGTCCTGCTACCTGATGCTCAAGGGCTGGTCGCTGATCGGCGATGCCCTGTCTCATTCCATTGTGCCCGGGG
TGGCCGGTGCCTACCTGCTGGGGCTGCCGTTTTCCCTCGGCGCCTTTGTGGCGGGCGGGCTGGCTGCCGGCGCCATGCTG
CTGCTGCGCCAGCGCAGCCAGCTCAAGGAGGACGTGATCATCGGCCTGATTTTTTCAGGCTTTTTCGCCCTGGGGCTGTT
CATGATGTCGCTCAGGCCCATGGCGGTGAATATTCGTACCATAGTGCTCGGCAATATTCTGGCCATCGATCCCGCCGACA
TGGTGCAGTTGGTGATCATCGGGGTGGTGTCGCTGGCCGTGCTGCTGTGCAAATGGAAGGATTTGCTGGTGGTGTTTTTC
GATGAGCACCACGCCCGCTCGGTGGGCATCCATCCCGTTCGCCTCAGGCTGCTGTTCTTTACCCTGCTGGCGGCCTGTAC
GGTGGCGGCCATGCAGACGGTGGGGGCGTTTCTGGTGATCTGCATGGTGGTCACCCCCGGGGCGACCGCCTACTTGCTGA
GTGACCGCTTTCCGGTGCTGCTGCTGATCGCCGTGGGTCTGGGGGCCGTCACCAGCGCCCTGGGGGCTTATGCCAGCTAC
TTTCTTGACGGGGCCACCGGTGCCCTGATCGTGGTGCTGCAGACCCTGCTCTTTCTGCTGGCCTTTTTATTCGCCCCCAA
GTACGGCTACCTGGCCGCCCGCCGGCGCGCAGCCGAGGCCCGGGGGGCACAGTGA

Protein sequence :
MAALLEPFGYGYMVNAIWVSALVGGVCAFLSCYLMLKGWSLIGDALSHSIVPGVAGAYLLGLPFSLGAFVAGGLAAGAML
LLRQRSQLKEDVIIGLIFSGFFALGLFMMSLRPMAVNIRTIVLGNILAIDPADMVQLVIIGVVSLAVLLCKWKDLLVVFF
DEHHARSVGIHPVRLRLLFFTLLAACTVAAMQTVGAFLVICMVVTPGATAYLLSDRFPVLLLIAVGLGAVTSALGAYASY
FLDGATGALIVVLQTLLFLLAFLFAPKYGYLAARRRAAEARGAQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-69 76
sitC NP_461784.1 permease Virulence SPI-1 Protein 5e-69 76
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 5e-69 76
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 5e-69 76
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 4e-69 76
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 6e-32 42
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 6e-32 42
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 5e-32 41
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 7e-32 41
sitD NP_461785.1 permease Virulence SPI-1 Protein 7e-32 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GU3_02025 YP_005090912.1 ABC-3 protein BAC0351 Protein 3e-69 76
GU3_02025 YP_005090912.1 ABC-3 protein BAC0441 Protein 3e-57 67
GU3_02025 YP_005090912.1 ABC-3 protein BAC0442 Protein 3e-30 42
GU3_02025 YP_005090912.1 ABC-3 protein BAC0352 Protein 3e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GU3_02025 YP_005090912.1 ABC-3 protein VFG0527 Protein 2e-69 76
GU3_02025 YP_005090912.1 ABC-3 protein VFG0528 Protein 3e-32 41