Gene Information

Name : GU3_02020 (GU3_02020)
Accession : YP_005090911.1
Strain : Oceanimonas sp. GK1
Genome accession: NC_016745
Putative virulence/resistance : Virulence
Product : iron transmembrane ABC transporter component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 416340 - 417176 bp
Length : 837 bp
Strand : -
Note : COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components

DNA sequence : 
ATGATGGATGCATTGCTGATGCCCCTGCAGTTCGCCTTTATGACCAAGGCTCTGCTGATTGCGGCCCTGCTCGCGGTGCC
GACGGCCTTGCTGTCGTGTTTTCTGGTGCTCAAAGGCTGGGCGCTGATGGGCGACGCCATGAGCCATGGGGTGTTTCCCG
GCGTGGTGCTGGCCTATATGGCGGGCATGCCGCTGGCGCTGGGAGCCTTTGGCGCCGGCATGATCTGTGCCCTCGGCATC
GGCTTTCTCGCCGCCAACAGCCGCATCAAGCAGGATACCGTGATGGGCATCGTGTTCTCGGGCATGTTCGGGCTGGGCCT
GCTGCTTTATGTCAGCATCAGCACCGAGGTGCACCTGGATCATATTCTGTTTGGCGACATGCTGGGAGTGGGCCAGCGGG
ACATTATTGAAACCGCGGCGGTGGCGCTGCTGACGGTGCTGGTGCTGATCATCAAATGGAAGGATTTTTTGCTGCATGCC
TTCGATCCGGTGCAGGCGAGGGCGGTGGGGCTGAAAGTGACCTGGCTGCACTACGGCCTGTTGTGCCTGCTGACCCTGAC
CATAGTGGCGGCGCTAAAGTCGGTGGGCATTCTGCTGGCCATCGCCATGCTGATTGCCCCCGGCGCCACCGCCCTGCTGC
TGACCTGCCGCTTTGGCCTGATGCTGCTGTGGGCGGTGCTGGCGGCGGTGTGCGCCTCCCTGGCCGGCGTGTACCTGTCG
TTTTTTATCGACAGTGCCCCGGCACCCACCATAGTGCTGCTGATGATGCTGCAGTTTCTGCTGGCGCTGGCGGTCTGTGG
GCGCCGCCCCGGGGTGAAGGGCGCGGCCGGCCAATAA

Protein sequence : 
MMDALLMPLQFAFMTKALLIAALLAVPTALLSCFLVLKGWALMGDAMSHGVFPGVVLAYMAGMPLALGAFGAGMICALGI
GFLAANSRIKQDTVMGIVFSGMFGLGLLLYVSISTEVHLDHILFGDMLGVGQRDIIETAAVALLTVLVLIIKWKDFLLHA
FDPVQARAVGLKVTWLHYGLLCLLTLTIVAALKSVGILLAIAMLIAPGATALLLTCRFGLMLLWAVLAAVCASLAGVYLS
FFIDSAPAPTIVLLMMLQFLLALAVCGRRPGVKGAAGQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_461785.1 permease Virulence SPI-1 Protein 8e-66 67
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 8e-66 67
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 7e-66 67
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 7e-66 67
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 6e-66 67

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GU3_02020 YP_005090911.1 iron transmembrane ABC transporter component BAC0352 Protein 4e-66 67
GU3_02020 YP_005090911.1 iron transmembrane ABC transporter component BAC0442 Protein 4e-49 55
GU3_02020 YP_005090911.1 iron transmembrane ABC transporter component BAC0441 Protein 1e-36 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GU3_02020 YP_005090911.1 iron transmembrane ABC transporter component VFG0528 Protein 4e-66 67