Gene Information

Name : fliP (GU3_14110)
Accession : YP_005093325.1
Strain : Oceanimonas sp. GK1
Genome accession: NC_016745
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3061985 - 3062719 bp
Length : 735 bp
Strand : -
Note : COG1338 Flagellar biosynthesis pathway, component FliP

DNA sequence : 
ATGAAGCGTAACTACCGGCTGGCATTGCTGGCGCTGGCCCTGTTGCCGGGGCTGGCTTCGGCCGACATGCCGCTGCTGAC
GGTGACCGGGCCCGACGGCGACACCGAATACAGCCTGAAAATCCAGATTTTGCTGCTGATGACTGCGCTGGGCTTGTTGC
CGGCGTTTTTGCTGATGCTCACCAGCTTTACCCGCATTATCGTGGTGCTGGCGGTGCTGCGTCAGGCTCTTGGGTTGCAG
CAGAGCCCCCCCAACCGGGTGCTGATCGGCATTGCCCTGTCGCTGACGTTGCTGATCATGCGGCCGGTATTGCAGGACAT
CTATCACCACGCCTTTGTGCCTTATGACAATGGCACCATTGGTTTTGAGCAGGCACTGATGACGGCAAAAGCGCCGCTGC
AGACCTTTATGCTGGCCCAGACCCGGGAAACGGATCTGGAGCAGATCCTGAATATTGCCCAGGAGCCCACCGATCTGTCG
CCGGAGGAAGTGCCCTTTGAGGTGCTGATCCCCGCCTTTGTGCTGAGCGAGCTGAAAACCGCCTTTCAAATCGGCTTTAT
GCTGTTTATTCCCTTTCTGGTGATCGACCTGGTGGTGGCCAGCGTGCTGATGGCCATGGGCATGATGATGCTGTCGCCCC
TGGTGATTTCGCTGCCCTTCAAGCTGATGCTGTTCGTGCTGGTGGACGGTTGGTCCATGACGGTGGGCACCCTGGCCCGC
AGTTTTGGAGGCTGA

Protein sequence : 
MKRNYRLALLALALLPGLASADMPLLTVTGPDGDTEYSLKIQILLLMTALGLLPAFLLMLTSFTRIIVVLAVLRQALGLQ
QSPPNRVLIGIALSLTLLIMRPVLQDIYHHAFVPYDNGTIGFEQALMTAKAPLQTFMLAQTRETDLEQILNIAQEPTDLS
PEEVPFEVLIPAFVLSELKTAFQIGFMLFIPFLVIDLVVASVLMAMGMMMLSPLVISLPFKLMLFVLVDGWSMTVGTLAR
SFGG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 9e-28 43
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 4e-24 43
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 3e-24 43
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 1e-27 42
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 1e-27 42
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 1e-27 42
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 2e-29 42
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 2e-29 42
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 4e-29 42
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 4e-29 42
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 3e-29 42
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 3e-29 42
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 1e-27 42
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 5e-23 42
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 5e-23 42
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 1e-29 42
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 1e-28 41
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 2e-24 41
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 2e-24 41
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 1e-27 41
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 2e-27 41
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 2e-27 41
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 2e-27 41
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 2e-27 41
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 1e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_005093325.1 flagellar biosynthesis protein FliP VFG1259 Protein 2e-54 62
fliP YP_005093325.1 flagellar biosynthesis protein FliP VFG2016 Protein 2e-51 59
fliP YP_005093325.1 flagellar biosynthesis protein FliP VFG2494 Protein 1e-54 59
fliP YP_005093325.1 flagellar biosynthesis protein FliP VFG2338 Protein 8e-48 59
fliP YP_005093325.1 flagellar biosynthesis protein FliP VFG0044 Protein 3e-28 42
fliP YP_005093325.1 flagellar biosynthesis protein FliP VFG0519 Protein 7e-28 41