Gene Information

Name : fliP (GU3_13320)
Accession : YP_005093167.1
Strain : Oceanimonas sp. GK1
Genome accession: NC_016745
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2902430 - 2903179 bp
Length : 750 bp
Strand : -
Note : COG1338 Flagellar biosynthesis pathway, component FliP

DNA sequence : 
GTGAGCCGAGTTCGTTGCCTATTACCGCTGTTGCTGCTGCTGCTGGCTAGTCCGGCTTTCGCCCAACAGGGCATGTCGGC
GGTGACGGTCACCACCAACCCGGACGGCAGCCAGGAATACAGCCTCACCCTGCAGGTGCTGGCGCTGATGACGGCGCTGT
CGTTCCTGCCGGCGGTGGTCATCATGATGACCTCCTTTACCCGCATTATTGTGGTGCTGTCCATTCTGCGGCAGGCCCTG
GGCCTGCAGCAGAGCCCGTCCAACCAGGTGCTGATCGGCATCAGCCTGTTCCTGTCGTTTTTTATCATGGCGCCGGTACT
GGACCGGGTGAACGCTGAGGCGCTGCAGCCCTACCTGGCGGAAGAAATCGGCTCCAGGGAGGCCCTGGCCCGGGCTGAGC
TGCCCATTCGCGACTTTATGCTGGCCCAGACCCGGGTCAAAGATCTCGACACCTTTCTTAATATTGCCAATGTGCAGGTG
GACAGCGAGGCCGAGGTGCCGCTCAGGGTGCTGATCCCGGCCTTTGTGACCAGCGAGCTGAAAACCGCTTTTCAAATCGG
CTTTATGCTGTTTCTGCCGTTTCTGGTGATCGATCTGGTGGTGGCCAGCATACTGATGGCCATGGGCATGATGATGCTGT
CGCCCATGCTGATTTCCCTGCCCTTCAAGCTGATGCTGTTTGTGCTGGTGGATGGCTGGAACCTGATCATGGGCACGCTG
GCCACCAGCTTCGGACTGGGAGCAAGCTAA

Protein sequence : 
MSRVRCLLPLLLLLLASPAFAQQGMSAVTVTTNPDGSQEYSLTLQVLALMTALSFLPAVVIMMTSFTRIIVVLSILRQAL
GLQQSPSNQVLIGISLFLSFFIMAPVLDRVNAEALQPYLAEEIGSREALARAELPIRDFMLAQTRVKDLDTFLNIANVQV
DSEAEVPLRVLIPAFVTSELKTAFQIGFMLFLPFLVIDLVVASILMAMGMMMLSPMLISLPFKLMLFVLVDGWNLIMGTL
ATSFGLGAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 4e-25 46
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 5e-19 43
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 5e-19 43
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 5e-19 43
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 3e-23 43
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 2e-25 43
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 3e-23 43
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 2e-23 43
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 2e-23 43
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 1e-23 43
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 2e-25 43
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 3e-25 43
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 3e-25 43
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 1e-24 42
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 5e-19 42
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 9e-25 42
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 9e-25 42
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 1e-24 42
lscR AAO18040.1 LscR Virulence TTSS locus Protein 3e-20 41
escR AAL57527.1 EscR Virulence LEE Protein 4e-22 41
escR CAC81847.1 EscR protein Virulence LEE II Protein 4e-22 41
escR CAI43889.1 EscR protein Virulence LEE Protein 4e-22 41
escR AAC31528.1 L0049 Virulence LEE Protein 4e-22 41
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 2e-21 41
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 4e-22 41
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 5e-22 41
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 5e-22 41
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 5e-22 41
escR AAK26700.1 EscR Virulence LEE Protein 4e-22 41
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 5e-22 41
unnamed AAL06354.1 EscR Virulence LEE Protein 1e-23 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_005093167.1 flagellar biosynthesis protein FliP VFG1259 Protein 3e-64 67
fliP YP_005093167.1 flagellar biosynthesis protein FliP VFG2016 Protein 6e-57 61
fliP YP_005093167.1 flagellar biosynthesis protein FliP VFG2338 Protein 1e-50 56
fliP YP_005093167.1 flagellar biosynthesis protein FliP VFG2494 Protein 7e-52 55
fliP YP_005093167.1 flagellar biosynthesis protein FliP VFG0044 Protein 3e-25 45
fliP YP_005093167.1 flagellar biosynthesis protein FliP VFG0519 Protein 8e-24 43
fliP YP_005093167.1 flagellar biosynthesis protein FliP VFG0188 Protein 8e-22 42
fliP YP_005093167.1 flagellar biosynthesis protein FliP VFG0827 Protein 2e-22 41