Gene Information

Name : GU3_00570 (GU3_00570)
Accession : YP_005090621.1
Strain : Oceanimonas sp. GK1
Genome accession: NC_016745
Putative virulence/resistance : Virulence
Product : TonB-dependent receptor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 117297 - 119516 bp
Length : 2220 bp
Strand : +
Note : COG4771 Outer membrane receptor for ferrienterochelin and colicins

DNA sequence :
ATGCCCATGCCCGCCCCCAGCCGCCTCGCCAGCGCCATTTCCATGGTGCTGCTGAACGCCGTTGCCGTCAGCACCGCTCA
GGCCCAGTCCACCCAGGTATTCGATACCGTGGTGGTCAGCGCCGCCGGCTTTGAACAGGACGTCAAGGACGCGCCGGCCA
GCATTACCGTTATCGGCCAGCAGGAACTGCAGCAGAAGCGCTACGGCAACCTGGCCCAGGCCCTGGACGGGGTGGAAGGC
ATTGATATTCGCCAGGGCACCGGCAAGACCGGGGGCCTGAATATCAGCATGCGTGGTCTGCCCAGCGAATATACCCTGAT
CCTGATCGACGGCCGCCGCCAGAATACCTCCGGCAACGCCACCCCCAACGGTTTTAACGACACCTCCACCAGCTTTATGC
CGCCGCTGTCCGCCATTGAGCGCATTGAGGTGATCCGTGGCCCCATGTCCACCCTGTATGGCTCCGATGCCATGGGCGGG
GTGATCAATATCATCACCAAAAAAGTGGCCGACGAATGGAGCGGCTCCCTGGATCTGGACCACACCTTTCAGCAGGATCG
CGACTACGGCAACAGCAGCAAGACCAGCTTTTATGCCAGCGGCCCGCTGATGGAAGACAAACTGGGGCTGGCGGTGCGCG
GCAGCGTGTTTGACCGGGCCGCTTCCGATCTGACCTTTGACAACGGCAGTACCGTCAACAAACGCGGCGTTTCACCGGTG
GAAGGCCGCAACTACACCCTGGGCGGCCGCCTGACCCTGACCCCGAACGAACACCACGATATCTCCCTGGATGTGGAGCG
GGGCCGGCAGGTCTATAACAATGACGACTGCCAGCTGGGCAACCTGGACGGTAAGGGCGGTGGCAGCGCGACCGACGGCT
GCTCCACTGACGAACCCACCCAGGCCAATGGCTATAAGGACGAGCTGCGCTTTGAGCGGGATCAGCTGGCCCTGCTGCAC
ACCGCCCGCCTGGGCTTTGGCAAGCTGGACAGCAGCATTACCCATAACACCACCGAAACCCTGGGTCGTACCATTCCTGG
CGGACGGGTCGGTCAGTCCAGCTTCAAGCCCATTGACAGCAGCTATGACGGCTTTCCCTCCATCATTGTGGGTAACGATC
GGGAACTGAAAGCCACCGAGTTGGTGATCGACAGCAAGCTGGTGGCCCCCATCGGCGAGGCCCATATCGCCACCGTCGGC
GGCCAGTGGCAGGATGCCGAGCTGAAAGACGGCATCGCCACCGAGACCTTCGAACAAACTTCCTGGGCCCTGTTCGGGGA
AGATGAATGGCTGCTGCGGGACGATCTGGCCCTGACCCTGGGTGCCCGCTACGATCATCACGACGCCTTTGGCGGCCATG
TCAGCCCCCGCGGCTACCTGGTGTGGACCGCCAGCGACAACTGGACCCTGAAGGGCGGCGTCAGCCGGGGTTACAAGACC
CCCAGCCTGAACGATCTGCATGAGGGCATCAACGGCATCAGCGGTCAGGGTTCGACCATTACCATCGGCAACCCGGATCT
GCGGCCGGAAACCACCACCAGCACCGAAATCGGCGCCTATTACGACAACCTGGCCGGCTTCAACGCCAACGCCACCCTGT
TTCATAACCAGTTCGATGACAAGATTGCCGAGGGCAACTCCATCAACGATCCGCTGTGCGCCGGCAACTCCGGCGGTACC
TGTTCACAAAAGGTCAATGTCGACGAGGCCGTCACCCAGGGCCTGGAGCTGGCCGCCGGCTGGCAATTCGCCCCGGACTG
GCGACTGTCCGGCAACTATACCTTTACCGACAGCGAGCAGAAGAGCGGCAAGGATCAAGGCGAGCCCCTGACCAACACCC
CCAAACACATGCTCAATGCCAAGCTGAGCTGGAGCACCACCGAGCAACTGACCCTGTGGCTGCAGGGCGAGTACCGCAGC
GATCGCACCCGCTTCCTCAGCAAGCGTGAAAACCTGGACCCCGATCAGCAGGCCCTGTTCGACGCGGTTGGCGATATCAA
GGGCTATGAGCTGCTCCATCTGGGGGGCTCCTACCAGGTCTCCGACAACGTAACCCTGAACGCCACCATCTATAACCTGC
TCGACAAGGACTTCACCACCGGTACTTTCTATAACAACGGTGCCGACTGGGCATCCGATTACACCCAGAGCGGCCGCTCC
ACCGACGGCACCCTGGAAGAAGGCCGCCGCCTCTGGCTGTCCACCAATATCCGCTTTTAA

Protein sequence :
MPMPAPSRLASAISMVLLNAVAVSTAQAQSTQVFDTVVVSAAGFEQDVKDAPASITVIGQQELQQKRYGNLAQALDGVEG
IDIRQGTGKTGGLNISMRGLPSEYTLILIDGRRQNTSGNATPNGFNDTSTSFMPPLSAIERIEVIRGPMSTLYGSDAMGG
VINIITKKVADEWSGSLDLDHTFQQDRDYGNSSKTSFYASGPLMEDKLGLAVRGSVFDRAASDLTFDNGSTVNKRGVSPV
EGRNYTLGGRLTLTPNEHHDISLDVERGRQVYNNDDCQLGNLDGKGGGSATDGCSTDEPTQANGYKDELRFERDQLALLH
TARLGFGKLDSSITHNTTETLGRTIPGGRVGQSSFKPIDSSYDGFPSIIVGNDRELKATELVIDSKLVAPIGEAHIATVG
GQWQDAELKDGIATETFEQTSWALFGEDEWLLRDDLALTLGARYDHHDAFGGHVSPRGYLVWTASDNWTLKGGVSRGYKT
PSLNDLHEGINGISGQGSTITIGNPDLRPETTTSTEIGAYYDNLAGFNANATLFHNQFDDKIAEGNSINDPLCAGNSGGT
CSQKVNVDEAVTQGLELAAGWQFAPDWRLSGNYTFTDSEQKSGKDQGEPLTNTPKHMLNAKLSWSTTEQLTLWLQGEYRS
DRTRFLSKRENLDPDQQALFDAVGDIKGYELLHLGGSYQVSDNVTLNATIYNLLDKDFTTGTFYNNGADWASDYTQSGRS
TDGTLEEGRRLWLSTNIRF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
r4 AAC61730.1 exogenous ferric siderophore receptor R4 Not tested PAI I CFT073 Protein 1e-126 45
unnamed CAC39288.1 hypothetical protein Not tested LPA Protein 9e-128 45
c3610 NP_755485.1 bifunctional enterobactin receptor/adhesin protein Not tested PAI I CFT073 Protein 5e-127 44
ECUMN_3356 YP_002414032.1 bifunctional enterobactin receptor/adhesin protein Virulence Not named Protein 5e-127 44
Z1178 NP_286713.1 bifunctional enterobactin receptor/adhesin protein Virulence TAI Protein 4e-127 44
Z1617 NP_287121.1 bifunctional enterobactin receptor/adhesin protein Not tested TAI Protein 4e-127 44
iha AAF36432.2 adhesin Virulence TAI Protein 3e-127 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GU3_00570 YP_005090621.1 TonB-dependent receptor VFG1731 Protein 2e-127 44