Gene Information

Name : GU3_04980 (GU3_04980)
Accession : YP_005091503.1
Strain : Oceanimonas sp. GK1
Genome accession: NC_016745
Putative virulence/resistance : Virulence
Product : DNA-binding heavy metal response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1083432 - 1084103 bp
Length : 672 bp
Strand : +
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGCGCATTCTGGTGGTGGAAGACGAAGCCAAAACTGCCGATTACCTGAGAAAGGGCTTTAGCGAATCCGGTTATCAGGT
GGAGGTCGCCAAAGACGGCCTGGAAGGGCGCTATCTGCTGGAAGAAAGCGCCTTTGATCTGGTGATCCTCGACATCATGC
TGCCGGGCTTGGATGGCTGGCAGCTGCTGCAGTTTATTCGCAGCCAAAGCGATACCCCGGTGATTTGCCTGAGCGCCCGG
GACGCGGTGGAAGACAAGGTGCGCGGTCTGGAGCAGGGCGCCGATGACTATCTGGCCAAGCCCTTTTCCTTTGCCGAGCT
GCTGGCCCGGGCTCGCAAGCTGCTGCGCCGGGGCAAGCCAGCCGAGCCGCTGTTTTACCGGCTGGCGGATCTGCAACTGG
ATCCGCTGGCGCGCCGGGTGAGCCGGGGCGGGCGGCGCATCGAGCTCACCAACAAGGAGTTCACCCTGTTGCAGTTGTTG
CTGGCCCACCAGGGGGAGGTGTTGTCGCGTACCTATATCGCCTCCCAGGTGTGGCACATGAACTTTGACAGCGACACCAA
TGTGGTGGATGTGGCCATTCGCCGGCTGCGGGCCAAGATCGACGACGACTTTGAGCCCAAGGTCATTCACACCGTGCGTG
GCATGGGTTATGTGTGCGAGCAGCGGGAATGA

Protein sequence : 
MRILVVEDEAKTADYLRKGFSESGYQVEVAKDGLEGRYLLEESAFDLVILDIMLPGLDGWQLLQFIRSQSDTPVICLSAR
DAVEDKVRGLEQGADDYLAKPFSFAELLARARKLLRRGKPAEPLFYRLADLQLDPLARRVSRGGRRIELTNKEFTLLQLL
LAHQGEVLSRTYIASQVWHMNFDSDTNVVDVAIRRLRAKIDDDFEPKVIHTVRGMGYVCEQRE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-52 58
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-52 56
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 1e-26 41
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 1e-26 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GU3_04980 YP_005091503.1 DNA-binding heavy metal response regulator BAC0125 Protein 8e-60 64
GU3_04980 YP_005091503.1 DNA-binding heavy metal response regulator BAC0638 Protein 3e-48 59
GU3_04980 YP_005091503.1 DNA-binding heavy metal response regulator BAC0197 Protein 2e-55 59
GU3_04980 YP_005091503.1 DNA-binding heavy metal response regulator BAC0111 Protein 6e-55 57
GU3_04980 YP_005091503.1 DNA-binding heavy metal response regulator BAC0083 Protein 1e-53 57
GU3_04980 YP_005091503.1 DNA-binding heavy metal response regulator BAC0308 Protein 7e-53 57
GU3_04980 YP_005091503.1 DNA-binding heavy metal response regulator BAC0347 Protein 6e-47 52
GU3_04980 YP_005091503.1 DNA-binding heavy metal response regulator HE999704.1.gene1528. Protein 4e-27 43
GU3_04980 YP_005091503.1 DNA-binding heavy metal response regulator NC_002951.3238224.p0 Protein 9e-26 42
GU3_04980 YP_005091503.1 DNA-binding heavy metal response regulator NC_007793.3914065.p0 Protein 9e-26 42
GU3_04980 YP_005091503.1 DNA-binding heavy metal response regulator NC_002758.1121390.p0 Protein 9e-26 42
GU3_04980 YP_005091503.1 DNA-binding heavy metal response regulator NC_010079.5776364.p0 Protein 9e-26 42
GU3_04980 YP_005091503.1 DNA-binding heavy metal response regulator NC_002952.2859858.p0 Protein 9e-26 42
GU3_04980 YP_005091503.1 DNA-binding heavy metal response regulator NC_007622.3794948.p0 Protein 9e-26 42
GU3_04980 YP_005091503.1 DNA-binding heavy metal response regulator NC_003923.1003417.p0 Protein 9e-26 42
GU3_04980 YP_005091503.1 DNA-binding heavy metal response regulator NC_013450.8614146.p0 Protein 9e-26 42
GU3_04980 YP_005091503.1 DNA-binding heavy metal response regulator AE000516.2.gene3505. Protein 2e-27 42
GU3_04980 YP_005091503.1 DNA-binding heavy metal response regulator AE015929.1.gene1106. Protein 2e-21 41
GU3_04980 YP_005091503.1 DNA-binding heavy metal response regulator NC_012469.1.7685629. Protein 2e-24 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
GU3_04980 YP_005091503.1 DNA-binding heavy metal response regulator VFG0596 Protein 3e-53 58
GU3_04980 YP_005091503.1 DNA-binding heavy metal response regulator VFG1390 Protein 6e-39 48
GU3_04980 YP_005091503.1 DNA-binding heavy metal response regulator VFG1563 Protein 6e-27 41
GU3_04980 YP_005091503.1 DNA-binding heavy metal response regulator VFG1702 Protein 5e-27 41
GU3_04980 YP_005091503.1 DNA-binding heavy metal response regulator VFG1386 Protein 7e-28 41
GU3_04980 YP_005091503.1 DNA-binding heavy metal response regulator VFG1389 Protein 1e-26 41