Gene Information

Name : PSE_4083 (PSE_4083)
Accession : YP_005082609.1
Strain : Pseudovibrio sp. FO-BEG1
Genome accession: NC_016642
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4420590 - 4421348 bp
Length : 759 bp
Strand : +
Note : -

DNA sequence : 
ATGAAAGCAAAGTTGGGCGGAAGCAAAGGGCAAATTGGCCTTTTGGTTTTCGCTCTCTTGCTTTTCTGGTTTGGTCCTGC
CGCCGCACAAAGCATCTCAATTGACTTCGGCGGTGGAGAGGGCGATTCCGTAACAGAGCGCGCCGTTCAGCTGGTCATGC
TGTTAACGGTGCTTTCTCTTGCACCAAGCATCCTGATCATGGTGACGAGCTTCACACGTATTGTTGTGGTGCTCTCCCTG
CTCCGCTCAGCCATCGGCTTGCAGACTGCTCCACCAAACGCAGTCATGCTTTCCCTTGCATTGTTCCTGACAGCATTCGT
CATGATGCCTGCCTTTGAAACCGCATGGGATCTGGGCGCAAAGCCAATGATTGAAGGAACCATTGAGCCGCAGGAAGCAT
TTGAGCGTGCCTCCGAACCGTTCCATCAGTTCATGCGCCAGCAAGTCCGTGAATCTGATCTGCTGCTCTTTCAGGAACTC
GCCAAGGCCCCTACCCCAGAAACACCAGAGGATCTCAGCCTCCGCGTTCTGGTACCGGCCTTCATGATCAGTGAATTGCG
CCGCGCCTTCGAGATCGGCTTCCTGCTATATCTCCCGTTCCTGATCATCGACCTCGTGATCGCATCCGTTCTTATGTCCA
TGGGTATGATGATGCTGCCACCCATCGTGATCTCCCTGCCCTTCAAGCTCATCTTCTTTGTGCTTGTCGACGGCTGGCAA
CTGATCGCAGGCAGTCTGGTCCGAAGTTTCGGCGGTTAG

Protein sequence : 
MKAKLGGSKGQIGLLVFALLLFWFGPAAAQSISIDFGGGEGDSVTERAVQLVMLLTVLSLAPSILIMVTSFTRIVVVLSL
LRSAIGLQTAPPNAVMLSLALFLTAFVMMPAFETAWDLGAKPMIEGTIEPQEAFERASEPFHQFMRQQVRESDLLLFQEL
AKAPTPETPEDLSLRVLVPAFMISELRRAFEIGFLLYLPFLIIDLVIASVLMSMGMMMLPPIVISLPFKLIFFVLVDGWQ
LIAGSLVRSFGG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscR AAO18040.1 LscR Virulence TTSS locus Protein 6e-35 45
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 1e-29 43
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 1e-28 42
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 4e-30 42
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 4e-30 42
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 3e-30 42
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 4e-33 41
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 5e-33 41
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 5e-33 41
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 1e-29 41
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 1e-29 41
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 3e-29 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSE_4083 YP_005082609.1 flagellar biosynthesis protein FliP VFG2338 Protein 2e-50 55
PSE_4083 YP_005082609.1 flagellar biosynthesis protein FliP VFG2494 Protein 5e-55 55
PSE_4083 YP_005082609.1 flagellar biosynthesis protein FliP VFG1259 Protein 1e-52 49
PSE_4083 YP_005082609.1 flagellar biosynthesis protein FliP VFG0188 Protein 2e-35 46
PSE_4083 YP_005082609.1 flagellar biosynthesis protein FliP VFG0394 Protein 7e-37 45
PSE_4083 YP_005082609.1 flagellar biosynthesis protein FliP VFG2016 Protein 2e-48 45
PSE_4083 YP_005082609.1 flagellar biosynthesis protein FliP VFG0044 Protein 3e-30 42
PSE_4083 YP_005082609.1 flagellar biosynthesis protein FliP VFG0519 Protein 2e-33 41