Gene Information

Name : yscR (PSE_3683)
Accession : YP_005082209.1
Strain : Pseudovibrio sp. FO-BEG1
Genome accession: NC_016642
Putative virulence/resistance : Virulence
Product : Yop proteins translocation protein R
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4004234 - 4004884 bp
Length : 651 bp
Strand : -
Note : -

DNA sequence : 
TTGCTGATGACGTCTGATCCATTCACGCTCATATTGGCACTTGTGGTCGTGGCCCTTGTCCCGTTTCTGGCCATTGTTGC
CACGTCCTTTATCAAGCTTTCAGTGGTGTTGCTGCTGGTGCGTAACGCGCTGGGTGTGCAGCAGATTCCGCCGAACATGG
CGTTGAATGCTCTGGCGATCATTCTGTCCGGCTACATCATGTTGCCAGTCTTCCTCCAGACCTTCGAGATTTTGGAGAAG
GGGAATTACTCCATCGCCACGGTGGAGGATATGAAGACAACCTTCGTTGCCGCCAAAGGGCCGCTGGAAGAGTTTTTGGC
CAAGCATGCAGACAGCAAGGAAAAGGCGTTCTTTCTGGAAGCTTCCCGTCAGCTGTGGCCTGCGGAAGTTGCTGACAGCA
TGAGTGCTGACAGCATTGCGATCCTGCTGCCGGCTTACACGGTCTCTCAGCTTCGGGAGGCCTTTGAGATTGGCTTCCTG
CTTTATCTGCCGTTCCTGGCGATTGACCTTGTGGTCTCCAACATCCTGCTCGCCATGGGCATGATGATGGTATCGCCGCT
GACCATTTCGCTGCCGTTCAAGCTGTTCCTGTTTGTGGCGGTTGATGGGTGGTCGCGTCTGATCCTTGGTCTCATCAAGA
CCTACGTTTAA

Protein sequence : 
MLMTSDPFTLILALVVVALVPFLAIVATSFIKLSVVLLLVRNALGVQQIPPNMALNALAIILSGYIMLPVFLQTFEILEK
GNYSIATVEDMKTTFVAAKGPLEEFLAKHADSKEKAFFLEASRQLWPAEVADSMSADSIAILLPAYTVSQLREAFEIGFL
LYLPFLAIDLVVSNILLAMGMMMVSPLTISLPFKLFLFVAVDGWSRLILGLIKTYV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscR AAO18040.1 LscR Virulence TTSS locus Protein 9e-49 57
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 2e-38 53
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 5e-42 49
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 7e-42 49
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 7e-42 49
escR AAL57527.1 EscR Virulence LEE Protein 9e-35 49
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 1e-34 49
escR CAC81847.1 EscR protein Virulence LEE II Protein 9e-35 49
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 1e-34 49
escR CAI43889.1 EscR protein Virulence LEE Protein 9e-35 49
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 1e-34 49
escR AAC31528.1 L0049 Virulence LEE Protein 8e-35 49
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 8e-35 49
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 1e-34 49
escR AAK26700.1 EscR Virulence LEE Protein 9e-35 49
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 1e-34 49
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 3e-42 49
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 5e-42 48
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 6e-42 48
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 6e-42 48
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 4e-42 48
escR AAC38369.1 EscR Virulence LEE Protein 5e-34 48
unnamed AAL06354.1 EscR Virulence LEE Protein 6e-35 48
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 3e-36 47
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 2e-36 47
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 3e-36 47
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-34 47
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-34 47
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 4e-38 46
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 4e-38 46
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 4e-38 46
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 1e-35 46
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 1e-35 46
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 4e-37 44
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 9e-34 44
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 3e-33 43
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 2e-33 43
spaP YP_217809.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 4e-27 43
spaP NP_461811.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 4e-27 43
spaP NP_457284.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 4e-27 43
spaP NP_806493.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 4e-27 43
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 1e-33 43
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 2e-39 43
spaP NP_311752.1 surface presentation of antigens protein SpaP Not tested LIM Protein 5e-34 43
epaP AAZ31293.1 EpaP Virulence ETT2 Protein 3e-33 43
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 3e-32 42
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 3e-32 42
ysaR AAS66846.1 YsaR Not tested SSR-1 Protein 2e-33 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yscR YP_005082209.1 Yop proteins translocation protein R VFG0394 Protein 1e-48 58
yscR YP_005082209.1 Yop proteins translocation protein R VFG0188 Protein 3e-49 57
yscR YP_005082209.1 Yop proteins translocation protein R VFG0044 Protein 2e-46 52
yscR YP_005082209.1 Yop proteins translocation protein R VFG0827 Protein 4e-35 49
yscR YP_005082209.1 Yop proteins translocation protein R VFG0715 Protein 3e-34 48
yscR YP_005082209.1 Yop proteins translocation protein R VFG0519 Protein 1e-36 47
yscR YP_005082209.1 Yop proteins translocation protein R VFG1012 Protein 3e-33 45
yscR YP_005082209.1 Yop proteins translocation protein R VFG0551 Protein 1e-27 43
yscR YP_005082209.1 Yop proteins translocation protein R VFG1773 Protein 3e-34 42
yscR YP_005082209.1 Yop proteins translocation protein R VFG2338 Protein 3e-28 42
yscR YP_005082209.1 Yop proteins translocation protein R VFG2455 Protein 1e-32 41