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Name : yscV (PSE_3677) Accession : YP_005082203.1 Strain : Pseudovibrio sp. FO-BEG1 Genome accession: NC_016642 Putative virulence/resistance : Virulence Product : Low calcium response locus protein D (LcrD) Function : - COG functional category : - COG ID : - EC number : - Position : 3998047 - 4000164 bp Length : 2118 bp Strand : + Note : - DNA sequence : ATGTCGCAGAGAAATGACGTTCTCTTGGCATTTCTGTTGATCGCAATCGTATTCATGATGATCCTTCCGTTGCCGACGGT TCTCGTGGATACGCTGATTGCCATCAACCTCAGCCTTGCAGCAATCCTGCTCATGGCCGCGCTCTACCTGAAGGATGTTG TCGCCCTCTCGGCGTTCCCGTCCATCTTGCTTCTGACAACCCTCTTCCGCTTGTCGCTGTCCATCACAACGACCCGTCTG ATCCTGCTGAAAGCCGATGCCGGTGAAATCATCGACACCTTCGGCAACTTCGTGGTGCAAGGCAATCTGGTCGTCGGTAT TGTTATCTTCCTGATCCTCACCATCGTGAACTTCCTTGTGATCACCAAGGGCTCCGAACGCGTGGCAGAGGTTTCCGCTC GCTTCTCCCTTGATGCGATGCCGGGCAAGCAGATGTCTATCGACTCTGACATGCGGGCCGGCCAGATCGAGCTGGACGAA GCAAAGCGCCGCCGGTCCAAGCTGGAAAAAGAAAGCCAGCTTTATGGCTCCATGGACGGCGCTATGAAGTTCGTGAAGGG CGATGCCATCGCGGGCCTGATCATCACCGCCGTTAACATCATCGGCGGCGTCATCATTGGCACCTCTCAGCACGGCATGA GCGCTGTTGATGCGCTGGATCGCTACACCATTCTTACCATTGGTGATGGTCTGGTTGCTCAGATCCCGGCTCTGTTCATC TCCATCACCGCTGGCTTCATGGTTACCCGCGTAAGCACCGATGACTCCAGCGATCTTGGCTCTGACATCGCCAAACAGTT GAACGGTGAACCAAAAGCCCTGATGATCGCAGCCGCGATCATGGTTGGCTTCGCGCTGATCCCGGGCTTCCCTTCTGTTA TCTTCCTGCTGCTGGCAGCTATCTTTGGCTCCATCGCTTACTTTGCAATGCGCCGGACCAAGACCCAGTCTGCGAAGAAA GACTCTCAGCAACTCTCAGCCTTTGCCCCGGCCATAGCGCCGGAAGGTGAAGCGCAGATGATGCCAGATGAGGACATGGC AACCGAGGTAGAAGCTGCACAGGATCTGGCGATTACCATCACGGTTCCTTTGATCGTCGATATCTCATCATCCGTACGCT CCACCCTCAACCCGAAGAAGCTGGACAGAGAAGTCGCAAAGGTCCGCAAGGCACTTTACTTCGATCTCGGCGTCCCCTTC CCAGGCATCAAGCTGCGCCTGAACGAGAGCCTGCCTGAAGGCGAGTATCGCATCCTCGTCAACGAGGTGCCGGTTGCCCG TGGTGCAGCCCGTTCTGGTTACTTCATTGCCCGCGAAACACCGCCAAACCTTGCCATGTTCAACATCCCTTACGAGGAAG GTGACAGCTTCTTGCCGAACACTCCATCCTTCTGGGTGAGCAACAGGCACTTTGAGCAGGCAACCCGCGCAGGCATTCAA ACCCTGACTCTGACCGGCATGCTCAGCCTGCATCTGGCTCATGTCCTCAAGCAGCACGCAGCAGAATTCCTCGGCATTCA GGAATGCATGTTCCTGCTCAAGCACATGGAAAGCGATTTTGACGAGCTGGTACGCGAAGTAAACCGCGCCGTCCCGCTCA TCTCACTCGCTGATGTTCTCAAACGATTGGTCCGTGAAGACATCTCCATCCGTGACATGCGCACCATCCTTCAGGCCATC GTGGAATGGGGCCAGAAGGAAAAAGACCCGCTTATGCTGACGGAACACATCCGCATGGCATTGAGCCGCTACATCACGCA TAAGTACTCTGCAGGCCAGCACATCATCCCGGCGTACCTCATCGACAAAGACATCGAGGACGAAGTGCGCGGTGCGATCA GACAGACCAGCGGCGCATCCTATCTTGCTTTGTCACCGGACACCCACCGCCAGCTCATCACCGTCATGCGCAGTGCCATT GGCGATAATCTGGCACACAACGGCATTGCTCCAGTGATCTTGGTACCAATGGATATCCGCCGTTTCTTCCGCAAAGTGAT TGAGCGAGATTACGCGGATCTGGCTGTGCTCTCCTTCCAGGAGCTGGCACCAAACGCGAACATCCAACCACTAGAGAAAA TCAGTTTACGCGGCAAGGTTGGCACCCTACCAGCCTGA Protein sequence : MSQRNDVLLAFLLIAIVFMMILPLPTVLVDTLIAINLSLAAILLMAALYLKDVVALSAFPSILLLTTLFRLSLSITTTRL ILLKADAGEIIDTFGNFVVQGNLVVGIVIFLILTIVNFLVITKGSERVAEVSARFSLDAMPGKQMSIDSDMRAGQIELDE AKRRRSKLEKESQLYGSMDGAMKFVKGDAIAGLIITAVNIIGGVIIGTSQHGMSAVDALDRYTILTIGDGLVAQIPALFI SITAGFMVTRVSTDDSSDLGSDIAKQLNGEPKALMIAAAIMVGFALIPGFPSVIFLLLAAIFGSIAYFAMRRTKTQSAKK DSQQLSAFAPAIAPEGEAQMMPDEDMATEVEAAQDLAITITVPLIVDISSSVRSTLNPKKLDREVAKVRKALYFDLGVPF PGIKLRLNESLPEGEYRILVNEVPVARGAARSGYFIARETPPNLAMFNIPYEEGDSFLPNTPSFWVSNRHFEQATRAGIQ TLTLTGMLSLHLAHVLKQHAAEFLGIQECMFLLKHMESDFDELVREVNRAVPLISLADVLKRLVREDISIRDMRTILQAI VEWGQKEKDPLMLTEHIRMALSRYITHKYSAGQHIIPAYLIDKDIEDEVRGAIRQTSGASYLALSPDTHRQLITVMRSAI GDNLAHNGIAPVILVPMDIRRFFRKVIERDYADLAVLSFQELAPNANIQPLEKISLRGKVGTLPA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 2e-174 | 53 |
| YPO0266 | YP_002345347.1 | secretion system apparatus protein SsaV | Virulence | Not named | Protein | 2e-104 | 44 |
| unnamed | AAL06368.1 | EscV | Virulence | LEE | Protein | 3e-103 | 42 |
| escV | YP_003223476.1 | translocator EscV | Virulence | LEE | Protein | 2e-104 | 42 |
| escV | CAI43875.1 | EscV protein | Virulence | LEE | Protein | 1e-104 | 42 |
| escV | AAC38382.1 | EscV | Virulence | LEE | Protein | 1e-104 | 42 |
| escV | NP_290269.1 | hypothetical protein | Virulence | LEE | Protein | 5e-104 | 42 |
| ECs4569 | NP_312596.1 | hypothetical protein | Virulence | LEE | Protein | 5e-104 | 42 |
| escV | AAC31514.1 | L0035 | Virulence | LEE | Protein | 4e-104 | 42 |
| escV | ACU09459.1 | EscV protein | Virulence | LEE | Protein | 4e-104 | 42 |
| invA | NP_806499.1 | virulence-associated secretory protein | Virulence | SPI-1 | Protein | 7e-106 | 42 |
| invA | NP_461817.1 | needle complex export protein | Virulence | SPI-1 | Protein | 7e-106 | 42 |
| invA | YP_217815.1 | invasion protein | Virulence | SPI-1 | Protein | 7e-106 | 42 |
| invA | NP_457290.1 | possible secretory protein (associated with virulence) | Virulence | SPI-1 | Protein | 7e-106 | 42 |
| ECs3731 | NP_311758.1 | EivA | Not tested | LIM | Protein | 2e-103 | 42 |
| hrcV | AAT96256.1 | HrcV | Virulence | S-PAI | Protein | 3e-100 | 42 |
| hrcV | AAT96297.1 | HrcV | Virulence | S-PAI | Protein | 1e-100 | 42 |
| hrcV | AAT96337.1 | HrcV | Virulence | S-PAI | Protein | 3e-101 | 42 |
| escV | YP_003236089.1 | putative translocator EscV | Virulence | LEE | Protein | 2e-103 | 41 |
| escV | CAC81861.1 | EscV protein | Virulence | LEE II | Protein | 5e-104 | 41 |
| escV | YP_003232152.1 | T3SS structure protein EscV | Virulence | LEE | Protein | 3e-104 | 41 |
| escV | AAK26714.1 | EscV | Virulence | LEE | Protein | 2e-104 | 41 |
| escV | AAL57541.1 | EscV | Virulence | LEE | Protein | 2e-104 | 41 |
| ssaV | CAA70536.1 | secretion system apparatus | Virulence | SPI-2 | Protein | 6e-94 | 41 |
| ssaV | NP_456114.1 | putative type III secretion protein | Virulence | SPI-2 | Protein | 1e-93 | 41 |
| ssaV | NP_805085.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 1e-93 | 41 |
| ssaV | YP_216422.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 9e-94 | 41 |
| ssaV | NP_460379.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 8e-94 | 41 |
| ysaV | AAS66840.1 | YsaV | Not tested | SSR-1 | Protein | 3e-108 | 41 |
| hrcV | NP_791229.1 | type III secretion protein HrcV | Virulence | Hrp PAI | Protein | 2e-98 | 41 |
| escV | AFO66296.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 1e-101 | 41 |
| escV | AFO66414.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 2e-101 | 41 |
| hrcV | ABA47273.1 | HrcV | Virulence | S-PAI | Protein | 1e-98 | 41 |
| hrcV | AAB05999.2 | HrcV | Virulence | Hrp PAI | Protein | 8e-108 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| yscV | YP_005082203.1 | Low calcium response locus protein D (LcrD) | VFG0064 | Protein | 3e-173 | 55 |
| yscV | YP_005082203.1 | Low calcium response locus protein D (LcrD) | VFG0384 | Protein | 4e-175 | 55 |
| yscV | YP_005082203.1 | Low calcium response locus protein D (LcrD) | VFG0198 | Protein | 5e-159 | 54 |
| yscV | YP_005082203.1 | Low calcium response locus protein D (LcrD) | VFG2126 | Protein | 4e-122 | 44 |
| yscV | YP_005082203.1 | Low calcium response locus protein D (LcrD) | VFG0729 | Protein | 7e-105 | 42 |
| yscV | YP_005082203.1 | Low calcium response locus protein D (LcrD) | VFG0813 | Protein | 2e-104 | 42 |
| yscV | YP_005082203.1 | Low calcium response locus protein D (LcrD) | VFG0557 | Protein | 3e-106 | 42 |
| yscV | YP_005082203.1 | Low calcium response locus protein D (LcrD) | VFG0514 | Protein | 4e-94 | 41 |
