Gene Information

Name : PSE_2486 (PSE_2486)
Accession : YP_005081016.1
Strain : Pseudovibrio sp. FO-BEG1
Genome accession: NC_016642
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2626527 - 2627198 bp
Length : 672 bp
Strand : +
Note : -

DNA sequence : 
TTGATTATTGAAGATGATCGGGAAGCAGCAGATTATCTGCTCAAAGCACTGAAAGAAGCAGGGCACTCACCTGATCACGC
AGACAATGGCGAAGATGGACTTGAGCTGGCAATCTCCAACACATGGGATGTGCTTGTCGTCGACCGCATGCTGCCAAAAC
GCGATGGCCTATCCATCATCGAAACACTTCGCGCCTCTGGCGATGAAACCCCGGTTTTGATCCTCTCAGCATTGTCACAG
GTAGACGACCGCGTCACCGGACTGCGTGCCGGAGGTGACGATTACCTTCCAAAACCCTACGCTTTTTCTGAGCTGCTCGC
CCGCGTTGAAGTGCTCAGCCGCCGCAAAGCTGGTCCTCAGGTGGAAACCAAATTGCAGGTCTCCGATCTGGTGCTGGACC
GTCTCGCACACTCCGTCACCCGCGCAGGGCAGGAGATCGTGCTGCAGCCTCGCGAGTTCCGCCTGCTCGAATACCTTATG
AAGCATGCCGGACAGGTGGTGACCCGCACCATGCTGCTTGAGAACGTCTGGGACTATCACTTTGATCCGCAGACCAATGT
GATTGATGTTCACATCTCGAGGCTGCGGTCCAAAATCGACAAAGGCTTCGATTTCCCGTTGCTTCATACTGTTCGTGGTG
CAGGATATTCCATCCGTGACAGCTCTAACTAG

Protein sequence : 
MIIEDDREAADYLLKALKEAGHSPDHADNGEDGLELAISNTWDVLVVDRMLPKRDGLSIIETLRASGDETPVLILSALSQ
VDDRVTGLRAGGDDYLPKPYAFSELLARVEVLSRRKAGPQVETKLQVSDLVLDRLAHSVTRAGQEIVLQPREFRLLEYLM
KHAGQVVTRTMLLENVWDYHFDPQTNVIDVHISRLRSKIDKGFDFPLLHTVRGAGYSIRDSSN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-36 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSE_2486 YP_005081016.1 DNA-binding response regulator BAC0083 Protein 7e-47 48
PSE_2486 YP_005081016.1 DNA-binding response regulator BAC0347 Protein 1e-45 47
PSE_2486 YP_005081016.1 DNA-binding response regulator BAC0111 Protein 2e-50 47
PSE_2486 YP_005081016.1 DNA-binding response regulator BAC0125 Protein 2e-43 46
PSE_2486 YP_005081016.1 DNA-binding response regulator BAC0308 Protein 2e-41 46
PSE_2486 YP_005081016.1 DNA-binding response regulator BAC0638 Protein 2e-38 45
PSE_2486 YP_005081016.1 DNA-binding response regulator BAC0197 Protein 2e-39 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSE_2486 YP_005081016.1 DNA-binding response regulator VFG1389 Protein 1e-33 42
PSE_2486 YP_005081016.1 DNA-binding response regulator VFG0473 Protein 9e-25 42
PSE_2486 YP_005081016.1 DNA-binding response regulator VFG0596 Protein 4e-37 41