Gene Information

Name : dctM (PSE_1888)
Accession : YP_005080420.1
Strain : Pseudovibrio sp. FO-BEG1
Genome accession: NC_016642
Putative virulence/resistance : Virulence
Product : TRAP dicarboxylate transporter subunit DctM
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2007838 - 2009160 bp
Length : 1323 bp
Strand : -
Note : -

DNA sequence : 
ATGGAAGCACTTCTTCTGCTCGGCCTCTTGTTTGGCCTAATCTTTCTGCGCATGCCAGTACCGTTCGCCATGCTGGCTGC
CTCTGTCATCTTCATCGTCATCCAGCAGGTCACCGGCGCTTCGCCACTGTTCTCTGCCGTGGGTCTGAAGATCATCGCAC
AGCGCGTCACGCCCTCGCTGGAAAGCTTCCCACTGCTTGCAATCCCACTGTTCGTCTTTGCGGGCAACCTGCTCAACGTC
TCAGGCATTGCTGACAGGATCTTCGCCTTCGCCAAAACGCTGGTGGCCCATATTCACGGCGGCCTGGCGCACGTAAACAT
TCTGGCCTCCATCGTCTTTTCCGGCATGTCCGGCGTGGCACAGGCCGATGCTGCTGGCCTTGGCACCATCGAAATCAAGG
CCATGAAAGACGCCGGCTTTGAAAAGCCCTTCAGCGCCGCTGTCACTGCAGCTTCCTCCATTATTGGCCCGATCATCCCA
CCAAGTGTGATTATGGTGATCTATGCCGTACTGTCCGGTGAATCCATCGCCCGCCTGTTCCTGGCTGGCATCGTGCCGGG
CCTGTTCCTCGGCTTCGTGCTGATGGTGCTCATCTACTTCATGGCCGTTTCCGGCAAGGTGCACTCACCGGTTGCCCCGC
GGGCCACCTTCCGCGAAGTGGTTGTTGCAGGATGGCGTGCTTTGCCGGGTCTTCTGGCTCCGATCCTGCTGGTGTCCGGC
CTGCTGCTCGGTGTAGCAACCCCAACCGAGCTAGGCGCAATCGTCACCGTTTACGCCATGGCTCTTGGAGCGCTCTCCCG
TGAGATGTCCTTCAAGGATGTGCTGGATGCCATGCGGGCAACCACCTTCACCATCGGTGCCATGGTGTTCATCATTGGCT
GCGCAGCCCCAATCTCCTGGCTGATCTCAGTACTCAACGTACCGGAAACGCTGCAAACAGCTCTGCTGTCCATCTCCGAC
AACCCAATTGTGCTGTTGCTGATGATCAACCTGATGCTGCTGGTAGCCGGGCTCTTCATGGAAACTACCGCGATCTTGCT
GATTGGTGTGCCAACCCTGCTGCCGCTCATTGAGCATATCGGCATGGACACCACCCAGTTCGGCGTGATGATGATTTTCA
ACCTGCTGATCGGTGCGGTCTCCCCACCATTCGGCGTGATCCTGTTCATCATGATGGACATTGCCAAGATCAGCTATGGC
AAATTGGTCAAGGCCATGATGCCGTTCTATCTACCTATTGTGATTACACTAATTGTGATCACCTTCTTCCCGGCAATAAC
ACTGACGTTGCCAGATTTGGTTGCAGGTGTAAGCAGTCGTTGA

Protein sequence : 
MEALLLLGLLFGLIFLRMPVPFAMLAASVIFIVIQQVTGASPLFSAVGLKIIAQRVTPSLESFPLLAIPLFVFAGNLLNV
SGIADRIFAFAKTLVAHIHGGLAHVNILASIVFSGMSGVAQADAAGLGTIEIKAMKDAGFEKPFSAAVTAASSIIGPIIP
PSVIMVIYAVLSGESIARLFLAGIVPGLFLGFVLMVLIYFMAVSGKVHSPVAPRATFREVVVAGWRALPGLLAPILLVSG
LLLGVATPTELGAIVTVYAMALGALSREMSFKDVLDAMRATTFTIGAMVFIIGCAAPISWLISVLNVPETLQTALLSISD
NPIVLLLMINLMLLVAGLFMETTAILLIGVPTLLPLIEHIGMDTTQFGVMMIFNLLIGAVSPPFGVILFIMMDIAKISYG
KLVKAMMPFYLPIVITLIVITFFPAITLTLPDLVAGVSSR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 6e-54 41
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 5e-54 41
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 6e-54 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
dctM YP_005080420.1 TRAP dicarboxylate transporter subunit DctM VFG1110 Protein 3e-54 41