Gene Information

Name : evpB (PSE_1857)
Accession : YP_005080389.1
Strain : Pseudovibrio sp. FO-BEG1
Genome accession: NC_016642
Putative virulence/resistance : Virulence
Product : type VI secretion protein EvpB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1961221 - 1962714 bp
Length : 1494 bp
Strand : +
Note : COG3517

DNA sequence :
ATGGTAGATGTATCAGCCTCTGCCGGCCAGCCGGATGTTGCCGGTGCGGGCGCCGCGATTTCTCTTTTAGATCAGATTAT
GGAAGAAACGCGCATTCGCCCGGAAGACGAAGAAAGCTATTCCATAGCGCGCAGAGGCGTAGAGGCGTTTATTTCCGACC
TCCTTTCCAGTCAGGAAGTTGATCAACGGATCAATCGCGTTCTGGTCGATCGCATGATCTCCGAGTTGGACTTGAAAGTT
TCCTCGCAGCTGGACGAAATCCTTCATGATGAGAAGTTTCAGGAACTTGAGTCTGCCTGGCGCGGACTGAAGCTGCTGGT
TGATCGCACAGATTTCCGTGAAAACATCAAGATCGATGTGCTTTCTGTTTCCAAAGACAAGCTGCTGGAAGATTTTGAAA
CGAGCCCGGAAGTCGTACAATCCGGCCTTTACAAGCACGTCTATTCAAGTGGTTATGGCCAGTTTGGTGGTGAGCCAGTC
GGCGCCATGATTGCGAACTATGACTTTGGTCCAGGTGCTCGTGATGTAAAACTGCTGCAGTTTGCTGCTTCTGTCGGTGC
AATGGCACACGCTCCATTTATTGCGGCGGCAGGTCCAAAGATGTTCGACGTTGATGAGTATGTGGATCTGCCAGCGCAGA
AAGATCTGTTTTCCATCTACGAAGGACCGCGTTTCCGCAAATGGATGGGCTTCCGACAGAGTGAAGACTCCCGCTATGTT
GGCTTGACATGTCCACGCTTCTTGCTTCGCATGCCGTATGACGCTGAAGAAAATCCAGTTGATGCGTTCGTCTACAATGA
GAACGTGACGGAAGAGCATGAGAGCTACCTTTGGGGTAATACTTCCTTCTTGATGGCGACCCGCCTTACAGAGAGCTTTG
CGAAATACCGTTGGTGTCCAAACATCATTGGCCCTCAATCTGGTGGTGCTGTTCACGATCTTCCAGTGCATGTGTTCGAA
GCATTTGGTCAGCTTGAAGAGAAAATCCCGACAGAAGTTCTGGTCACAGATCGTCGCGAGTTTGAGCTTGCAGAAGAAGG
CTTCATTGCGCTGACCATGCGCAAAGGCTCTGACAATGCCGCTTTCTTCTCCGCAAACTCTGCCCAGAAGCCGAAAATCT
TCCAGAATACGAAGGAAGGTAAAGAAGCGGAGACCAACTACAAACTTGGTACGCAGCTTCCTTACATGATGATTGTGAAC
CGTCTGGCGCACTACATCAAAGTGCTGCAGCGTGAGCAGATTGGGTCCTGGAAAGAACGTGAAGATCTTGAGCGTGAGCT
GAACACCTGGCTGCGCCAGTACGTGGCCGATCAGGAGAACCCACCTCAAGATGTGCGTTCACGTCGTCCATTGCGTGCTG
CTGAAGTTATCGTCTCCGATGTTGAAGGTGATCCGGGTTGGTACCAGGTGTCTTTGAAGGTGCGTCCGCACTTCAAGTAC
ATGGGTGCAAACTTTGAGCTGTCGCTCGTAGGTAAGCTGGACAAGGATAGCTAA

Protein sequence :
MVDVSASAGQPDVAGAGAAISLLDQIMEETRIRPEDEESYSIARRGVEAFISDLLSSQEVDQRINRVLVDRMISELDLKV
SSQLDEILHDEKFQELESAWRGLKLLVDRTDFRENIKIDVLSVSKDKLLEDFETSPEVVQSGLYKHVYSSGYGQFGGEPV
GAMIANYDFGPGARDVKLLQFAASVGAMAHAPFIAAAGPKMFDVDEYVDLPAQKDLFSIYEGPRFRKWMGFRQSEDSRYV
GLTCPRFLLRMPYDAEENPVDAFVYNENVTEEHESYLWGNTSFLMATRLTESFAKYRWCPNIIGPQSGGAVHDLPVHVFE
AFGQLEEKIPTEVLVTDRREFELAEEGFIALTMRKGSDNAAFFSANSAQKPKIFQNTKEGKEAETNYKLGTQLPYMMIVN
RLAHYIKVLQREQIGSWKEREDLERELNTWLRQYVADQENPPQDVRSRRPLRAAEVIVSDVEGDPGWYQVSLKVRPHFKY
MGANFELSLVGKLDKDS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec18 YP_851426.1 hypothetical protein Not tested PAI II APEC-O1 Protein 1e-160 63
aec18 AAQ96712.1 Aec18 Not tested AGI-1 Protein 1e-160 63
HH0247 NP_859778.1 hypothetical protein Not tested HHGI1 Protein 2e-146 56

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
evpB YP_005080389.1 type VI secretion protein EvpB VFG2093 Protein 2e-177 73
evpB YP_005080389.1 type VI secretion protein EvpB VFG2475 Protein 8e-161 61
evpB YP_005080389.1 type VI secretion protein EvpB VFG2070 Protein 2e-80 41