Gene Information

Name : HPL003_19655 (HPL003_19655)
Accession : YP_005076892.1
Strain : Paenibacillus terrae HPL-003
Genome accession: NC_016641
Putative virulence/resistance : Virulence
Product : iron(III) -siderophore transporter ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4182929 - 4183744 bp
Length : 816 bp
Strand : +
Note : COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components

DNA sequence : 
ATGGGTTTAGAGGTGAAGGACCTGATGATTAAGTACGGGACAGACCCGGTTATTCAAGAACTGGACCTGCAAATTCCGGA
GGGAAAGATTACGGTACTAGTAGGCAGCAATGGGTGTGGAAAATCGACGATTTTGCGTGCCATGGCGCGGCTTTTGAAGC
CTGCGGCGGGAGCGGTGCTACTGGATGGACAGGCTATTGCCCAGTTACCCTCCAAGCAAATTGCCAAAAGGCTATCCATT
TTGCCGCAGGGACCGTCAGCGCCAGAAGGACTGACAGTGTATCAGTTGGTCAAGCAGGGTAGATATCCACATCAGAGCTG
GCTGAAGCAGTGGTCGGCAGAAGATGAAGCACAGGTACACAACGCGCTGCAAGCGACACAATTGGAGGATTTTGCGGATC
GTCCAGTAGATTCCTTATCTGGCGGGCAGCGCCAGCGCGCGTGGATTTCCATGACTTTGGCGCAGGGGACGGAAATGATC
TTACTGGATGAGCCGACTACCTATTTGGACATGACGCATCAAATTGAGATTTTGGACCTGCTGTTTGATTTGAATGAACA
AGAAGGGCGGACCATTGTCATGGTGCTGCATGATCTGAATCTGGCTTGTCGCTATGCGCACCATATGGTTGCGGTATACG
ATAAGTGTATTTATGCGCAGGGAAAGCCGGAAGAAATCATGACCGCCGAGACGGTGGAAAAGGTATTCCAACTGCGCTGC
CAAGTCATTCCTGATCCCTTGTACGGAACACCGATGTTTATTCCTCATGGAAAGGGGAGGAAAATGGGTGCTGTACGCCA
AAGGGTCTTCGTTTGA

Protein sequence : 
MGLEVKDLMIKYGTDPVIQELDLQIPEGKITVLVGSNGCGKSTILRAMARLLKPAAGAVLLDGQAIAQLPSKQIAKRLSI
LPQGPSAPEGLTVYQLVKQGRYPHQSWLKQWSAEDEAQVHNALQATQLEDFADRPVDSLSGGQRQRAWISMTLAQGTEMI
LLDEPTTYLDMTHQIEILDLLFDLNEQEGRTIVMVLHDLNLACRYAHHMVAVYDKCIYAQGKPEEIMTAETVEKVFQLRC
QVIPDPLYGTPMFIPHGKGRKMGAVRQRVFV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 7e-55 48
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 8e-61 46
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 7e-55 46
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 7e-55 46
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 2e-48 44
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 2e-56 43
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-56 43
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 1e-56 43
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 1e-56 43
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-45 41
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-45 41
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-45 41
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 4e-45 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPL003_19655 YP_005076892.1 iron(III) -siderophore transporter ATP-binding protein BAC0164 Protein 4e-55 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPL003_19655 YP_005076892.1 iron(III) -siderophore transporter ATP-binding protein VFG0925 Protein 3e-64 51
HPL003_19655 YP_005076892.1 iron(III) -siderophore transporter ATP-binding protein VFG1042 Protein 4e-55 48