Gene Information

Name : HPL003_19505 (HPL003_19505)
Accession : YP_005076862.1
Strain : Paenibacillus terrae HPL-003
Genome accession: NC_016641
Putative virulence/resistance : Virulence
Product : ABC transporter permease
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4152503 - 4153567 bp
Length : 1065 bp
Strand : +
Note : COG0609 ABC-type Fe3+-siderophore transport system, permease component

DNA sequence : 
ATGAGCAGTGCTGGAAAGGTTGCTTGGGGATTTACAACGATTATTCTACTGCTGACTGCCGGGTTGGTGCTGTCGGTCAC
ATTCGCGGTCATGCTAGGCCCCGTGGCCGTCGCACCGGGAACAGTATGGCGAATTGCGCTGTCCCATCTTCCCTGGCTGG
ATCAATGGATACCTGTGACATGGACAAGTCCAGAGCAATATATCGTCTGGGAAATCCGCTTTCCGCGCGTGCTGCTAGGT
GTCGTCGTAGGAGCAGGACTTGCTGTTACAGGTGCGGCTATTCAGGCCTTAATTCGTAATTCGTTAGCTGATCCCTATAT
CTTAGGAGTCTCGTCCGGGGCTTCGGTGACAGGGACGCTGGTGATTGTGTTTGGAGCTTTCGGATTCCTGGGCCGACTTG
CGCTGCCTTTATCTGCTTTTATAGGTTCGCTTGCTGCGATGCTCATGGTATTCGCATTGGCTCGTGTGGCTGGACGCATA
TCGACGACCCGCTTACTGCTGGCAGGGGTGGCGGTGTCCATGATGCTGTCTGCTGTGACCAACTTTATCGTCACTATGGC
CCCGAATGAAAAAGGCATTCGTGACGCGATGTATTGGATGATGGGAAGTCTGGCAGGCGCTCAATGGGATACGCTTCTCA
TACCAAGCCTCATTATATCGGCTGGAACAGCTATCCTACTTACCCGATATCGATCGCTAAATGCTTTACTAACGGGTGAA
GAGGTCGCCGTAACGCTCGGTGTGAACGTACAGGCGTTCCGCGTATTACTGGTTGTCGTGGCTTCTCTTTTAACTGGGGC
AGTCGTATCGGTCAGTGGCTCGATTGGCTTTGTCGGGCTTATGATTCCGCACATCGTCAGGCTGATGGTGGGATCGGATC
ATCGACGTGTGCTACCCGTCAGCTTGTTGGCGGGAGCTATCTTTGTCGTGTGGGCAGACGTATGTGCCCGGCTCGTGCTG
GCTCCACAGGAGCTGCCAATAGGTATTGTGACGGCTATATGCGGGGGACCCTTCTTTGTATGGTTGCTGCGGCGCAGTTC
CTACGCGTTTGGAGGTGAAAAATGA

Protein sequence : 
MSSAGKVAWGFTTIILLLTAGLVLSVTFAVMLGPVAVAPGTVWRIALSHLPWLDQWIPVTWTSPEQYIVWEIRFPRVLLG
VVVGAGLAVTGAAIQALIRNSLADPYILGVSSGASVTGTLVIVFGAFGFLGRLALPLSAFIGSLAAMLMVFALARVAGRI
STTRLLLAGVAVSMMLSAVTNFIVTMAPNEKGIRDAMYWMMGSLAGAQWDTLLIPSLIISAGTAILLTRYRSLNALLTGE
EVAVTLGVNVQAFRVLLVVVASLLTGAVVSVSGSIGFVGLMIPHIVRLMVGSDHRRVLPVSLLAGAIFVVWADVCARLVL
APQELPIGIVTAICGGPFFVWLLRRSSYAFGGEK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1913 YP_005682168.1 Iron(III) dicitrate transport system permease fecD Virulence PiCp 7 Protein 4e-29 44
CpC231_1907 YP_005684260.1 Iron(III) dicitrate transport system permease fecD Virulence PiCp 7 Protein 4e-29 44
cpfrc_01919 YP_003784319.1 hypothetical protein Not tested PiCp 7 Protein 4e-29 44
CpI19_1928 YP_005686352.1 Iron(III) dicitrate transport system permease fecD Virulence PiCp 7 Protein 1e-28 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPL003_19505 YP_005076862.1 ABC transporter permease VFG0922 Protein 3e-23 43