Gene Information

Name : HPL003_18220 (HPL003_18220)
Accession : YP_005076609.1
Strain : Paenibacillus terrae HPL-003
Genome accession: NC_016641
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliQ
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3877665 - 3877934 bp
Length : 270 bp
Strand : +
Note : COG1987 Flagellar biosynthesis pathway, component FliQ

DNA sequence : 
ATGACTTCGGAGTTTATTATTTCCCTTGCCGGACAAGCGGTGTACACAGTGCTTAAAGTTAGCGCTCCGATGCTGATTTT
GGGACTGGTCGTCGGTTTGATTATCAGTATTTTTCAGGCGACAACCCAAATTCAGGAGCAGACTTTGGCATTTGTTCCGA
AGATTGTCGCCGTATTACTGGCATTGCTCTTGTTCGGACCTTGGATATTGACGACATTAGTGGATTTTACGTTTAACATT
CTGGACAATTTGTACAAATATATAGGTTAG

Protein sequence : 
MTSEFIISLAGQAVYTVLKVSAPMLILGLVVGLIISIFQATTQIQEQTLAFVPKIVAVLLALLLFGPWILTTLVDFTFNI
LDNLYKYIG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcS ABA47280.1 HrcS Virulence S-PAI Protein 0.004 47
hrcS AAT96201.1 HrcS Virulence T-PAI Protein 0.003 44
hrcS AAT96147.1 HrcS Virulence T-PAI Protein 0.003 44
hrcS NP_791221.1 type III secretion protein HrcS Virulence Hrp PAI Protein 0.005 42
hrcS ABQ88360.1 HrcS Virulence Hrp PAI Protein 0.007 42
hrpO AAB05076.1 HrpO Virulence Hrp PAI Protein 0.007 42
hrcS AAG33885.1 HrcS Virulence Hrp PAI Protein 0.004 42
escS AAK26701.1 EscS Virulence LEE Protein 0.002 41
escS YP_003223489.1 T3SS structure protein EscS Virulence LEE Protein 0.003 41
escS AAL57528.1 EscS Virulence LEE Protein 0.002 41
escS YP_003232139.1 T3SS structure protein EscS Virulence LEE Protein 0.003 41
escS CAC81848.1 EscS protein Virulence LEE II Protein 0.002 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPL003_18220 YP_005076609.1 flagellar biosynthetic protein FliQ VFG2015 Protein 6e-08 50
HPL003_18220 YP_005076609.1 flagellar biosynthetic protein FliQ VFG2495 Protein 4e-08 49
HPL003_18220 YP_005076609.1 flagellar biosynthetic protein FliQ VFG2132 Protein 2e-05 46
HPL003_18220 YP_005076609.1 flagellar biosynthetic protein FliQ VFG0395 Protein 0.001 42