Gene Information

Name : HPL003_18150 (HPL003_18150)
Accession : YP_005076595.1
Strain : Paenibacillus terrae HPL-003
Genome accession: NC_016641
Putative virulence/resistance : Virulence
Product : flagellum-specific ATP synthase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3866700 - 3868019 bp
Length : 1320 bp
Strand : +
Note : COG1157 Flagellar biosynthesis/type III secretory pathway ATPase

DNA sequence :
ATGAAGGGGCTTAATACGCAGCGCTACATGGATCATTTGCGACAACTGGACCCGGTTCGGGTAAACGGCAAAGTGACACA
GGTTATCGGTTTGATGGTGGAATCGGAAGGTCCGGACGCCAGTATCGGGGATGTTTGTTACATTTATCCGGGTAAAACGG
CTAAGCCGCTGCAAGCGGAAGTTGTAGGCTTTAGAGACAACAAGGTACTTTTGATGCCGCTTGGAGAACTGCAATCCATT
GGTCCCGGTTGTGATGTCGTAGGAACAGGGAAGCCATTGAACGTGCAGGTGGGGTCGGAGCTGTTGGGCAAAGTGCTGGA
CGGTTTGGGCCAACCTTTGGACGGCTCGTTGATTCCATCACGGATGGCGAGATACTCGACCTTCAACATTCCATCGAATC
CGCTAAGTCGCCCGCGTGTGCAGGAGCCAATCAGTATCGGTGTACGAGCCATTGACGGATTGCTTACCATCGGTAAAGGA
CAGCGGGTCGGTATTTTCGCAGGCTCCGGTGTAGGTAAGAGTACCCTGATGGGAATGATTGCCCGTAATACGGAAGCAGA
TGTGAACGTAATTGCTCTGATCGGGGAACGTGGACGCGAGGTGCTGGACTTTATTGAACGGGATTTGGGACCGGAAGGGC
TTGAACGTTCAGTAGTCATTGTGGCAACTTCCGACCAACCCGCGTTGATCCGAATTAAGGGTGCGCTCATTGCAACGACG
ATCGCTGAATACTTCCGGGATCGCGGATTGAACGTCATGTTGATGATGGACTCGGTTACCCGGTATGCGATGGCGCAACG
TGAAGTAGGATTGGCAGTCGGAGAGCCACCAGCGATGAGGGGTTATACCCCTTCCGTATTCGCCAGTTTGCCCAAGTTGC
TGGAGCGTGCGGGAACCGGACCTACAGGTTCGATAACCGCTTTTTATACGGTGCTGGTCGATGGTGATGACATGAATGAA
CCCATCGCGGATGCGGTGCGCGGGATCTTGGATGGGCACATTGTGCTCAACCGGGGGATAGCGAATAAAGGACATTTTCC
CGCGATTGATGTGTTAGCCAGCATTAGCCGGGTCATGAAGGATATTGCACCACGTGACCAGATTGACGCTGCCGAGAATA
TTAAGCGCCTGATGGCGGTTTATAAAGATTCGGAGGACCTGATTAACATTGGGGCTTATCAGCAGGGGTCGAATGCAGAA
ATTGACGAATCTATGGATCGCATACGGGATATATGGGATTTTACAAGGCAAAGAACGGATGAAAAGGTTGAGCTGGACGA
GGTTCGTGAGCGTTTGATTTCTGAATTTACGAGGAGATGA

Protein sequence :
MKGLNTQRYMDHLRQLDPVRVNGKVTQVIGLMVESEGPDASIGDVCYIYPGKTAKPLQAEVVGFRDNKVLLMPLGELQSI
GPGCDVVGTGKPLNVQVGSELLGKVLDGLGQPLDGSLIPSRMARYSTFNIPSNPLSRPRVQEPISIGVRAIDGLLTIGKG
QRVGIFAGSGVGKSTLMGMIARNTEADVNVIALIGERGREVLDFIERDLGPEGLERSVVIVATSDQPALIRIKGALIATT
IAEYFRDRGLNVMLMMDSVTRYAMAQREVGLAVGEPPAMRGYTPSVFASLPKLLERAGTGPTGSITAFYTVLVDGDDMNE
PIADAVRGILDGHIVLNRGIANKGHFPAIDVLASISRVMKDIAPRDQIDAAENIKRLMAVYKDSEDLINIGAYQQGSNAE
IDESMDRIRDIWDFTRQRTDEKVELDEVRERLISEFTRR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-105 56
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-105 55
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 9e-106 55
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 3e-106 54
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 2e-106 54
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 2e-106 54
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 3e-106 54
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 6e-103 54
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 6e-103 54
lscN AAO18044.1 LscN Virulence TTSS locus Protein 3e-105 52
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 2e-86 48
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 2e-86 48
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 4e-91 48
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 1e-87 48
escN AAK26715.1 EscN Virulence LEE Protein 9e-88 48
escN AAL57542.1 EscN Virulence LEE Protein 9e-88 48
escN AAC38383.1 EscN Virulence LEE Protein 5e-88 48
escN NP_290268.1 hypothetical protein Virulence LEE Protein 2e-87 48
escN CAC81862.1 EscN protein Virulence LEE II Protein 3e-88 48
ECs4568 NP_312595.1 EscN Virulence LEE Protein 2e-87 48
escN CAI43874.1 EscN protein Virulence LEE Protein 2e-88 48
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 3e-88 48
escN YP_003223475.1 translocator EscN Virulence LEE Protein 2e-88 48
escN AAC31513.1 L0034 Virulence LEE Protein 1e-87 48
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 3e-86 47
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 1e-86 47
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 1e-86 47
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 2e-86 47
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 1e-79 47
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 4e-86 47
unnamed AAL06369.1 EscN Virulence LEE Protein 4e-86 47
escN YP_003236088.1 translocator EscN Virulence LEE Protein 3e-87 47
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 3e-79 46
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 4e-74 45
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 7e-79 45
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 4e-79 45
invC YP_217813.1 ATP synthase SpaL Virulence SPI-1 Protein 2e-72 45
spaI NP_457288.1 secretory apparatus ATP synthase (associated with virulence) Virulence SPI-1 Protein 2e-72 45
spaI NP_806497.1 ATP synthase SpaL Virulence SPI-1 Protein 2e-72 45
invC NP_461815.1 ATP synthase SpaL Virulence SPI-1 Protein 2e-72 45
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 2e-86 44
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 1e-77 44
ysaN AAS66842.1 YsaN Not tested SSR-1 Protein 9e-75 43
hrcN ABQ88354.1 HrcN Virulence Hrp PAI Protein 4e-73 43
hrpJ4 AAA81942.1 HrpJ4 Virulence Hrp PAI Protein 4e-73 43
hrcN AAT96299.1 HrcN Virulence S-PAI Protein 3e-80 43
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 7e-81 43
hrcN AAT96258.1 HrcN Virulence S-PAI Protein 7e-80 43
ECs3730 NP_311757.1 ATP synthase SpaL Not tested LIM Protein 1e-74 42
invC AAS66861.1 InvC Not tested SSR-2 Protein 2e-74 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPL003_18150 YP_005076595.1 flagellum-specific ATP synthase VFG2144 Protein 8e-110 53
HPL003_18150 YP_005076595.1 flagellum-specific ATP synthase VFG0192 Protein 4e-105 53
HPL003_18150 YP_005076595.1 flagellum-specific ATP synthase VFG0390 Protein 3e-108 52
HPL003_18150 YP_005076595.1 flagellum-specific ATP synthase VFG0048 Protein 2e-105 51
HPL003_18150 YP_005076595.1 flagellum-specific ATP synthase VFG1254 Protein 2e-98 51
HPL003_18150 YP_005076595.1 flagellum-specific ATP synthase VFG2499 Protein 2e-89 50
HPL003_18150 YP_005076595.1 flagellum-specific ATP synthase VFG0812 Protein 8e-88 48
HPL003_18150 YP_005076595.1 flagellum-specific ATP synthase VFG0730 Protein 3e-88 48
HPL003_18150 YP_005076595.1 flagellum-specific ATP synthase VFG2331 Protein 4e-91 47
HPL003_18150 YP_005076595.1 flagellum-specific ATP synthase VFG0515 Protein 1e-86 47
HPL003_18150 YP_005076595.1 flagellum-specific ATP synthase VFG0555 Protein 7e-73 45
HPL003_18150 YP_005076595.1 flagellum-specific ATP synthase VFG1008 Protein 4e-68 42
HPL003_18150 YP_005076595.1 flagellum-specific ATP synthase VFG2459 Protein 8e-75 41
HPL003_18150 YP_005076595.1 flagellum-specific ATP synthase VFG1778 Protein 4e-69 41