Gene Information

Name : HPL003_15715 (HPL003_15715)
Accession : YP_005076114.1
Strain : Paenibacillus terrae HPL-003
Genome accession: NC_016641
Putative virulence/resistance : Virulence
Product : sensory transduction protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3372504 - 3373193 bp
Length : 690 bp
Strand : +
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGCGTTCTACCATTCTGATTATTGATGACGATGAAAAAATTGTGTCCATGCTGCGCAGAGGGCTGGCCTTCGAGGGCTA
TGAAGTGATGACGGCTGCCAACGGCGCAGAGGGATTGAATAAAATGCTTACAGCTGAGCCTGATGTTGTCGTGCTGGATG
TGATGATGCCGCAACTGGATGGTTTCGAGGTATGTCGTCGCATGCGGGAGGGAGGAAGTACGGTACCCGTTCTAATGCTT
ACAGCCAAGGACGAGGTGGAGAACCGGGTCAAGGGATTGGATCTGGGTGCAGACGACTATCTCGTCAAGCCGTTTGCTCT
GGAGGAGCTACTGGCTCGTGTGCGGGCGCTTCTGCGCCGTAAAACCGACCAGCAGGATCATAACGGACATCGACTGACCT
TCGAAGATCTACAACTGGATAACGAATCGCGTGAAGTGGTTCGCGGTGGCAAGCGGCTGGAACTGACGGCTAAGGAATTT
GAACTGCTCCACTTGTTTATGCAAAACCCGAAGCGTGTTCTGTCTCGTGATCTGATTATGGACAAAATTTGGGGCTATGA
CTACAGCGGTGAGTCGAACGTGCTGGAAGTATATATTGCCATGCTCCGACAAAAAACGGAGCAGGATGGCGGCAAACGGC
TCATTCGTACGATTCGGGGAGCGGGTTATATTTTAAGAGGTGATGTGTAA

Protein sequence : 
MRSTILIIDDDEKIVSMLRRGLAFEGYEVMTAANGAEGLNKMLTAEPDVVVLDVMMPQLDGFEVCRRMREGGSTVPVLML
TAKDEVENRVKGLDLGADDYLVKPFALEELLARVRALLRRKTDQQDHNGHRLTFEDLQLDNESREVVRGGKRLELTAKEF
ELLHLFMQNPKRVLSRDLIMDKIWGYDYSGESNVLEVYIAMLRQKTEQDGGKRLIRTIRGAGYILRGDV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 4e-34 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPL003_15715 YP_005076114.1 sensory transduction protein BAC0083 Protein 8e-41 49
HPL003_15715 YP_005076114.1 sensory transduction protein BAC0638 Protein 1e-34 47
HPL003_15715 YP_005076114.1 sensory transduction protein BAC0308 Protein 2e-37 45
HPL003_15715 YP_005076114.1 sensory transduction protein BAC0125 Protein 5e-38 44
HPL003_15715 YP_005076114.1 sensory transduction protein BAC0197 Protein 2e-33 44
HPL003_15715 YP_005076114.1 sensory transduction protein HE999704.1.gene1528. Protein 5e-40 43
HPL003_15715 YP_005076114.1 sensory transduction protein AF155139.2.orf0.gene Protein 2e-31 41
HPL003_15715 YP_005076114.1 sensory transduction protein NC_002952.2859905.p0 Protein 8e-40 41
HPL003_15715 YP_005076114.1 sensory transduction protein BAC0347 Protein 9e-36 41
HPL003_15715 YP_005076114.1 sensory transduction protein NC_007793.3914279.p0 Protein 5e-40 41
HPL003_15715 YP_005076114.1 sensory transduction protein NC_002745.1124361.p0 Protein 5e-40 41
HPL003_15715 YP_005076114.1 sensory transduction protein NC_009782.5559369.p0 Protein 5e-40 41
HPL003_15715 YP_005076114.1 sensory transduction protein NC_002951.3237708.p0 Protein 5e-40 41
HPL003_15715 YP_005076114.1 sensory transduction protein NC_007622.3794472.p0 Protein 8e-40 41
HPL003_15715 YP_005076114.1 sensory transduction protein NC_003923.1003749.p0 Protein 5e-40 41
HPL003_15715 YP_005076114.1 sensory transduction protein NC_002758.1121668.p0 Protein 5e-40 41
HPL003_15715 YP_005076114.1 sensory transduction protein NC_009641.5332272.p0 Protein 5e-40 41
HPL003_15715 YP_005076114.1 sensory transduction protein NC_013450.8614421.p0 Protein 5e-40 41
HPL003_15715 YP_005076114.1 sensory transduction protein HE999704.1.gene2815. Protein 2e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPL003_15715 YP_005076114.1 sensory transduction protein VFG1390 Protein 3e-53 54
HPL003_15715 YP_005076114.1 sensory transduction protein VFG1389 Protein 2e-38 45
HPL003_15715 YP_005076114.1 sensory transduction protein VFG1386 Protein 9e-47 44
HPL003_15715 YP_005076114.1 sensory transduction protein VFG0596 Protein 1e-34 41