Gene Information

Name : HPL003_05035 (HPL003_05035)
Accession : YP_005073997.1
Strain : Paenibacillus terrae HPL-003
Genome accession: NC_016641
Putative virulence/resistance : Virulence
Product : cobalmin/iron-siderophore ABC transporter ATPase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1060855 - 1061748 bp
Length : 894 bp
Strand : -
Note : COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components

DNA sequence : 
ATGTTTCGTCTGAAAACGGCTAATCTGGATATTGCTTATGAAGATCGGTTGATTGTGGAGGACCTGAACGTTGAAATACC
GCAAGGGAAAATCACAGCATTGGTGGGCGCAAATGGCTCCGGCAAGTCTACCATTCTAAAGACGATGGCTCGCATCATGA
ATCCTAAAGGCGGCAGCGTTCTGCTCGACGGTAAATCCATTCATAAGCAATCTACCCGGGAGGTAGCAAAGCAGTTGGCT
ATTTTGCCGCAAAATCCGACTGCACCGGAGGGTTTGACTGTGACGGAACTGGTATCTTACGGACGTTTCCCCTATCAAAA
AGGCTTTGGCTCCATGAAAGCAGATGATCGTAAAATGGTAGAGTGGGCCATTCAGGTGACAGGAATGAGCGAGTTCCACG
ATCGCCCAATCGACCAGCTTTCTGGCGGGCAGCGCCAGCGTGCATGGATTGCCATGGCGCTTGCGCAGGATACGGATATT
TTGTTTCTGGATGAACCAACTACCTTTTTGGATATGGCGCATCAATTGGAAGTGCTGCATTTGTTAGAGTATTTGAACAC
TTCAGCCGAACGTACCATTGTCATGGTCGTGCATGATTTGAACCATGCAGCCCGGTACGCCCAGCATATGGTCGCGATCA
AAAAAGGCAAGGCCGAGGCTGTGGGAACGCCAACCGAGGTCATGTCCCCTGACGTGCTGCGCGAGGTGTTCGGTATTGAA
GCAGATATCGTAACAGATCCTCGTACAGGTGTGCCGCTGTGTCTTCCATATGCTTTGGCCGGGCAACCAGCGGTAAGCCA
AGCCGTGAAGGGATTGGAACTGGAAGAGAATCAACTAGTGGGCTCCGTTTCCGAGCGGCGTGAAGCCAGACCACAGGTAG
CGGCAAGAGGATAA

Protein sequence : 
MFRLKTANLDIAYEDRLIVEDLNVEIPQGKITALVGANGSGKSTILKTMARIMNPKGGSVLLDGKSIHKQSTREVAKQLA
ILPQNPTAPEGLTVTELVSYGRFPYQKGFGSMKADDRKMVEWAIQVTGMSEFHDRPIDQLSGGQRQRAWIAMALAQDTDI
LFLDEPTTFLDMAHQLEVLHLLEYLNTSAERTIVMVVHDLNHAARYAQHMVAIKKGKAEAVGTPTEVMSPDVLREVFGIE
ADIVTDPRTGVPLCLPYALAGQPAVSQAVKGLELEENQLVGSVSERREARPQVAARG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 9e-57 48
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 4e-55 46
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 7e-59 46
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 7e-59 46
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 6e-52 46
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 6e-52 46
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 6e-52 46
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 6e-52 46
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 7e-55 45
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-56 44
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-56 44
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-56 44
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 1e-56 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPL003_05035 YP_005073997.1 cobalmin/iron-siderophore ABC transporter ATPase BAC0164 Protein 2e-55 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPL003_05035 YP_005073997.1 cobalmin/iron-siderophore ABC transporter ATPase VFG1042 Protein 2e-55 46
HPL003_05035 YP_005073997.1 cobalmin/iron-siderophore ABC transporter ATPase VFG0925 Protein 7e-56 46