Gene Information

Name : NIES39_E01870 (NIES39_E01870)
Accession : YP_005068957.1
Strain : Arthrospira platensis NIES-39
Genome accession: NC_016640
Putative virulence/resistance : Virulence
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2574925 - 2575734 bp
Length : 810 bp
Strand : -
Note : -

DNA sequence :
ATGAAGCGATCGAAAATCATAGTTATGGATACTCTCAAAATTGCCCACAACTCCTTGAATAAGAAGGTTTCAGCGGATAT
GAGTATTATCATCAGTAACCTTGGGGTACAGTACCGAGGGGTTGAAGCACTGCGGGACATTAACCTACAAGTGAACCCAG
GACGGCTAACCGGAATTATTGGACCCAATGGTGCGGGTAAGAGTACCTTGTTAAAAGCTATTTTGGGGCTGATTCCTGCC
ACAGGAAGCCCTGCAATTTTCGGTGAGCGTCCCCTGAGTCAACAACGCCACCGCGTCGCCTACGTCCCTCAGCGATCGCA
GATAGACTGGACTTATCCTGCCACAGTTTGGGATGTAGTAATGATGGGAAGAGTACGCCAAACTGGTTGGTTTCGAGGCT
TTTCGGGGGTCAGTCGCCGCTTGGCTACCCAAGCCTTACAACGGGTAGGAATGGAAACCTATAGCGCGCGTCCTATTGGT
CAACTTTCGGGAGGTCAACAGCAGCGGGTTTTCTTAGCTAGATCTTTAGCGCAACAGGCGGAAGTTTTCTGCTTTGATGA
ACCCTTTGCGGGTATTGATCAAAAAACTGAAAATGTGATTTTTAGTATTTTTAGGGAGTTAGCCGCTTCCGGTAAAATTG
TGTTAGTAATTAATCACGACTTGGGTAAATCAATTACCAATTTTGATGATTTGATTCTGCTAAACAAAGAACTAATCGCC
GCCGGAACTAGGGAAGCTGTCTTAACTCAGGAAAATCTTGATCATGCCTATGGTGGTAGGGTCATGTTTTTCTCAGACCA
TGCAGCTTGA

Protein sequence :
MKRSKIIVMDTLKIAHNSLNKKVSADMSIIISNLGVQYRGVEALRDINLQVNPGRLTGIIGPNGAGKSTLLKAILGLIPA
TGSPAIFGERPLSQQRHRVAYVPQRSQIDWTYPATVWDVVMMGRVRQTGWFRGFSGVSRRLATQALQRVGMETYSARPIG
QLSGGQQQRVFLARSLAQQAEVFCFDEPFAGIDQKTENVIFSIFRELAASGKIVLVINHDLGKSITNFDDLILLNKELIA
AGTREAVLTQENLDHAYGGRVMFFSDHAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 6e-44 45
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 4e-44 45
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 3e-41 41
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 3e-41 41
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 9e-42 41
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 6e-42 41
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 6e-42 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NIES39_E01870 YP_005068957.1 ABC transporter ATP-binding protein BAC0400 Protein 2e-49 47
NIES39_E01870 YP_005068957.1 ABC transporter ATP-binding protein BAC0350 Protein 4e-42 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
NIES39_E01870 YP_005068957.1 ABC transporter ATP-binding protein VFG0526 Protein 4e-42 41