Gene Information

Name : SpiGrapes_0589 (SpiGrapes_0589)
Accession : YP_005061448.1
Strain : Sphaerochaeta pleomorpha Grapes
Genome accession: NC_016633
Putative virulence/resistance : Unknown
Product : site-specific recombinase XerD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 643432 - 644340 bp
Length : 909 bp
Strand : -
Note : PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family

DNA sequence :
ATGTCTATCGAGGCTGACAGCCAACTGGTAGAGGATTACTGTGATTACCTTATGTTGCAGCGGAGGCTCTCTCGGGCAAC
CGTTGCAGTCTACTCACAGGAGATAGGCTTTTTTCTGGCCTATCTGCGTGCCTCCTCACTGGATGTCGAAACGGTCCCTG
TACTGGAAATCGAGAAGTACCTGTCCCATTCCAGGCAAGACAGGGACCTGTCAGCAAGGACGCTGGCAAGAAACCTTTCT
TCCCTTCGTTCTTTTTTCATATTCCTGCAGATAGGGAAAATCAGGAAAGACAATCCGGTCCTGCATCTGGGAAGCCCTAA
AATCGGAACCCGTTTTCCTGCTGTAGCAACCGTCTCTGAGGTTGACCGTCTTTTGGACAGCATCGATAGTTCGAACAATC
TCGGATACCGTGACCGTACCCTGTTCGAGCTTATCTATTCCTGTGGGCTACGGGTCAGCGAGGCCTGCGACCTGTCGGTA
GGCGATTATGCAATCCGTTCGCTACGGGTCCTGGGCAAGCGGAACAAGATGCGCCTCGTCCCGGTAGGCGAGATAGCCCA
GGACTATGTAAACTGTTACCTTGCCGATATCCGACCGGCCCTGGTGAAGGGAAACCTCAGCGAAAAGGCCTTGTTTGTCG
GTAGAAATGGGCATAAACTCACCCGGCAGGCCGTATTCAAACGATTCGAGATGTATTGTGACGCAATTGGCCTGGTTGCC
AAGGTCCATACGTTACGGCATAGTTTTGCCACGCATCTGCTGGAAGGTGGGGCTGATCTCCGTTCGGTCCAAGAGTTGCT
TGGCCATAGTGATATCAAGACAACACAAATCTATACACATGTACACACAGATGATCTCAAGAAGGCATATGATACCTTCC
ATGGGAATCCAAAAGAGGAAACCGAATGA

Protein sequence :
MSIEADSQLVEDYCDYLMLQRRLSRATVAVYSQEIGFFLAYLRASSLDVETVPVLEIEKYLSHSRQDRDLSARTLARNLS
SLRSFFIFLQIGKIRKDNPVLHLGSPKIGTRFPAVATVSEVDRLLDSIDSSNNLGYRDRTLFELIYSCGLRVSEACDLSV
GDYAIRSLRVLGKRNKMRLVPVGEIAQDYVNCYLADIRPALVKGNLSEKALFVGRNGHKLTRQAVFKRFEMYCDAIGLVA
KVHTLRHSFATHLLEGGADLRSVQELLGHSDIKTTQIYTHVHTDDLKKAYDTFHGNPKEETE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00307 YP_008207772.1 Site-specific recombinase XerD Not tested AbaR25 Protein 7e-37 45
BJAB0868_00311 YP_008211637.1 Site-specific recombinase XerD Not tested AbaR26 Protein 7e-37 45