Gene Information

Name : SpiGrapes_2809 (SpiGrapes_2809)
Accession : YP_005063575.1
Strain : Sphaerochaeta pleomorpha Grapes
Genome accession: NC_016633
Putative virulence/resistance : Virulence
Product : response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3073198 - 3073917 bp
Length : 720 bp
Strand : +
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal

DNA sequence : 
ATGATTATTTGCATGTCAACGCGGAAAAATTTGAAAGCCCGAGGAACAGTTCCAAGCATATTGGTGATAGATGATGAAGT
TGCATTCGCGGACTACTTGTGTCGAGGCCTGAGTTATGAAGGATACAAAGTAACGGCTGCGCAGAATGCTGAGGAGGGTT
GGGATCTGATCTTGCTTAGTAATCCAGACCTTGTGATTCTCGACGTTGGATTGCCGGACGTGGATGGAATAAGTTTATGC
CGTTCCCTTCGGCTTGAAAGACACCAAATGCCCATTTTAATGCTTACCGCACGTATCAATGTATCTGATCGTGTATTGGG
CTTGAATGCAGGCGCAGATGACTATTTACCGAAACCGTTTGCGTTTGATGAACTTATTGCAAGAATTTCAGCTCTGCTTC
GCAGGACAGGTGCCAACGGCGATCAACTATGTCTTGGTGATTTGAGCCTTTATTCCCAAGAGAGAAGAATTCGAAGAAAT
GACATCACCATTTCACTGACACCAAAGGAGTTTGAACTGTTATACTTGCTCTTTCAACACCCCCGGCAGATTGTCCCCAG
AGAGACAATATTATCTCATGTTTGGGGATTTGAGTATGAGCCGGAATCGAACGTCGTTGAGGTTTACATTCGCAGGCTTA
GAAAAAAACTTGGCCCTCCGAATATGATAGAGACAGCTCACGGTCTTGGCTATATCTTACGGGAACCCGACCGAGTATGA

Protein sequence : 
MIICMSTRKNLKARGTVPSILVIDDEVAFADYLCRGLSYEGYKVTAAQNAEEGWDLILLSNPDLVILDVGLPDVDGISLC
RSLRLERHQMPILMLTARINVSDRVLGLNAGADDYLPKPFAFDELIARISALLRRTGANGDQLCLGDLSLYSQERRIRRN
DITISLTPKEFELLYLLFQHPRQIVPRETILSHVWGFEYEPESNVVEVYIRRLRKKLGPPNMIETAHGLGYILREPDRV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-35 44
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 9e-35 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SpiGrapes_2809 YP_005063575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0125 Protein 5e-38 43
SpiGrapes_2809 YP_005063575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0083 Protein 9e-35 42
SpiGrapes_2809 YP_005063575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0111 Protein 1e-40 42
SpiGrapes_2809 YP_005063575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0197 Protein 2e-35 42
SpiGrapes_2809 YP_005063575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP001918.1.gene5135. Protein 3e-20 42
SpiGrapes_2809 YP_005063575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002758.1121390.p0 Protein 4e-40 41
SpiGrapes_2809 YP_005063575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_010079.5776364.p0 Protein 4e-40 41
SpiGrapes_2809 YP_005063575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002952.2859858.p0 Protein 4e-40 41
SpiGrapes_2809 YP_005063575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007622.3794948.p0 Protein 4e-40 41
SpiGrapes_2809 YP_005063575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_003923.1003417.p0 Protein 4e-40 41
SpiGrapes_2809 YP_005063575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_013450.8614146.p0 Protein 4e-40 41
SpiGrapes_2809 YP_005063575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002951.3238224.p0 Protein 4e-40 41
SpiGrapes_2809 YP_005063575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007793.3914065.p0 Protein 4e-40 41
SpiGrapes_2809 YP_005063575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0347 Protein 2e-36 41
SpiGrapes_2809 YP_005063575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0308 Protein 5e-36 41
SpiGrapes_2809 YP_005063575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0638 Protein 1e-31 41
SpiGrapes_2809 YP_005063575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0533 Protein 1e-22 41
SpiGrapes_2809 YP_005063575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP000647.1.gene4257. Protein 1e-22 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SpiGrapes_2809 YP_005063575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1390 Protein 2e-46 47
SpiGrapes_2809 YP_005063575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG0596 Protein 1e-35 44