Gene Information

Name : HMPREF0389_01215 (HMPREF0389_01215)
Accession : YP_005055373.1
Strain : Filifactor alocis ATCC 35896
Genome accession: NC_016630
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator YycF
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1908911 - 1909603 bp
Length : 693 bp
Strand : +
Note : -

DNA sequence : 
ATGAAAAATACCATTTTGATTATTGAAGATGAAAAGCCTATCTCTGATATTGTGAAGTTTAATTTGAAGAGAGAAGGTTA
TGATATTATCACCGCATTTGACGGTCTTGACGGCTATCAAAAAGGGATTCAAGAGAATGTGGATTTGATTCTGTTGGATA
TTATGCTTCCGTCAATGAATGGGTTTGATGTTTGCAGACACATTCGCGAAAAATCTTCTGTTCCTATTATTATGGTAACA
GCGAAGGAAGAAGAGGTAGATAAGATTCTCGGACTGGAGCTCGGAGCAGATGATTATATCACAAAACCGTTCAGCTTGCG
CGAATTGATTGCTCGTGTAAAGGCAAATATTCGCCGTACTTCCATGCCGAACAACAACTCTGCGGAGTCGGATTTGATTC
AACACAAAAATTTGGTAATTGATACTTCTAAATACTCTGTTACCAAAAATGATACTGTTTTGGAGTTGACGGTTCGTGAG
TATGAACTTTTGAAGTTTTTAGCTGTTCAACCGAACCAAGTTTTTTCAAGAGAACAACTTTTGAAACAGGTTTGGGGATA
TGAATACTACGGGGATATTCGTACGGTAGATGTAACCATTCGCCGTCTCAGAGAAAAATTGGAAGATGATGCATCTAACC
CTACTTATATTTTGACAAAGCGGGGAGTCGGATATTTTTTTAAGGGGGAATAA

Protein sequence : 
MKNTILIIEDEKPISDIVKFNLKREGYDIITAFDGLDGYQKGIQENVDLILLDIMLPSMNGFDVCRHIREKSSVPIIMVT
AKEEEVDKILGLELGADDYITKPFSLRELIARVKANIRRTSMPNNNSAESDLIQHKNLVIDTSKYSVTKNDTVLELTVRE
YELLKFLAVQPNQVFSREQLLKQVWGYEYYGDIRTVDVTIRRLREKLEDDASNPTYILTKRGVGYFFKGE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 2e-39 42
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 4e-39 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HMPREF0389_01215 YP_005055373.1 DNA-binding response regulator YycF NC_012469.1.7685629. Protein 1e-60 54
HMPREF0389_01215 YP_005055373.1 DNA-binding response regulator YycF HE999704.1.gene2815. Protein 4e-50 48
HMPREF0389_01215 YP_005055373.1 DNA-binding response regulator YycF NC_002952.2859905.p0 Protein 1e-50 47
HMPREF0389_01215 YP_005055373.1 DNA-binding response regulator YycF NC_002951.3237708.p0 Protein 1e-50 47
HMPREF0389_01215 YP_005055373.1 DNA-binding response regulator YycF NC_003923.1003749.p0 Protein 1e-50 47
HMPREF0389_01215 YP_005055373.1 DNA-binding response regulator YycF NC_002758.1121668.p0 Protein 1e-50 47
HMPREF0389_01215 YP_005055373.1 DNA-binding response regulator YycF NC_007622.3794472.p0 Protein 1e-50 47
HMPREF0389_01215 YP_005055373.1 DNA-binding response regulator YycF NC_009641.5332272.p0 Protein 1e-50 47
HMPREF0389_01215 YP_005055373.1 DNA-binding response regulator YycF NC_013450.8614421.p0 Protein 1e-50 47
HMPREF0389_01215 YP_005055373.1 DNA-binding response regulator YycF NC_007793.3914279.p0 Protein 1e-50 47
HMPREF0389_01215 YP_005055373.1 DNA-binding response regulator YycF NC_002745.1124361.p0 Protein 1e-50 47
HMPREF0389_01215 YP_005055373.1 DNA-binding response regulator YycF NC_009782.5559369.p0 Protein 1e-50 47
HMPREF0389_01215 YP_005055373.1 DNA-binding response regulator YycF NC_002951.3238224.p0 Protein 1e-40 45
HMPREF0389_01215 YP_005055373.1 DNA-binding response regulator YycF NC_007793.3914065.p0 Protein 1e-40 45
HMPREF0389_01215 YP_005055373.1 DNA-binding response regulator YycF NC_002758.1121390.p0 Protein 1e-40 45
HMPREF0389_01215 YP_005055373.1 DNA-binding response regulator YycF NC_010079.5776364.p0 Protein 1e-40 45
HMPREF0389_01215 YP_005055373.1 DNA-binding response regulator YycF NC_002952.2859858.p0 Protein 1e-40 45
HMPREF0389_01215 YP_005055373.1 DNA-binding response regulator YycF NC_007622.3794948.p0 Protein 1e-40 45
HMPREF0389_01215 YP_005055373.1 DNA-binding response regulator YycF NC_003923.1003417.p0 Protein 1e-40 45
HMPREF0389_01215 YP_005055373.1 DNA-binding response regulator YycF NC_013450.8614146.p0 Protein 1e-40 45
HMPREF0389_01215 YP_005055373.1 DNA-binding response regulator YycF AF155139.2.orf0.gene Protein 1e-41 44
HMPREF0389_01215 YP_005055373.1 DNA-binding response regulator YycF AE015929.1.gene1106. Protein 3e-35 43
HMPREF0389_01215 YP_005055373.1 DNA-binding response regulator YycF NC_012469.1.7686381. Protein 5e-45 43
HMPREF0389_01215 YP_005055373.1 DNA-binding response regulator YycF NC_014475.1.orf0.gen Protein 1e-42 43
HMPREF0389_01215 YP_005055373.1 DNA-binding response regulator YycF NC_005054.2598277.p0 Protein 1e-42 43
HMPREF0389_01215 YP_005055373.1 DNA-binding response regulator YycF CP000647.1.gene2531. Protein 3e-36 43
HMPREF0389_01215 YP_005055373.1 DNA-binding response regulator YycF BAC0596 Protein 3e-36 43
HMPREF0389_01215 YP_005055373.1 DNA-binding response regulator YycF CP001138.1.gene2239. Protein 3e-36 43
HMPREF0389_01215 YP_005055373.1 DNA-binding response regulator YycF AE000516.2.gene3505. Protein 3e-43 43
HMPREF0389_01215 YP_005055373.1 DNA-binding response regulator YycF HE999704.1.gene1528. Protein 2e-38 42
HMPREF0389_01215 YP_005055373.1 DNA-binding response regulator YycF AE016830.1.gene1681. Protein 2e-44 42
HMPREF0389_01215 YP_005055373.1 DNA-binding response regulator YycF DQ212986.1.gene4.p01 Protein 1e-39 42
HMPREF0389_01215 YP_005055373.1 DNA-binding response regulator YycF NC_002695.1.916589.p Protein 1e-36 42
HMPREF0389_01215 YP_005055373.1 DNA-binding response regulator YycF BAC0039 Protein 2e-36 42
HMPREF0389_01215 YP_005055373.1 DNA-binding response regulator YycF CP001918.1.gene3444. Protein 7e-36 42
HMPREF0389_01215 YP_005055373.1 DNA-binding response regulator YycF CP000034.1.gene2186. Protein 2e-36 42
HMPREF0389_01215 YP_005055373.1 DNA-binding response regulator YycF CP004022.1.gene1676. Protein 7e-35 42
HMPREF0389_01215 YP_005055373.1 DNA-binding response regulator YycF FJ349556.1.orf0.gene Protein 3e-41 41
HMPREF0389_01215 YP_005055373.1 DNA-binding response regulator YycF AM180355.1.gene1830. Protein 5e-39 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HMPREF0389_01215 YP_005055373.1 DNA-binding response regulator YycF VFG1563 Protein 9e-40 42
HMPREF0389_01215 YP_005055373.1 DNA-binding response regulator YycF VFG1702 Protein 2e-39 41