Gene Information

Name : HMPREF0389_00895 (HMPREF0389_00895)
Accession : YP_005055031.1
Strain : Filifactor alocis ATCC 35896
Genome accession: NC_016630
Putative virulence/resistance : Virulence
Product : zinc ABC transporter ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1520994 - 1521731 bp
Length : 738 bp
Strand : +
Note : -

DNA sequence : 
ATGTCAGATAAGATAGCAATTAAGGTAGAAGATTTAACAATTGCATACAATCACACCCCTGTTCTATGGGATATTGACTT
GACGGTTCAAAAGGGAGTTTTAATGGCAATTGTCGGTCCCAACGGTGCCGGAAAATCTACATTAATCAAATCCATGTTGG
GATTTTTGACACCTGTCAGCGGGAATGTACTGTTTTTTGGAAAACCATACTCTGCTGTCAGAAAAAGGATTGCCTATGTT
CCTCAAAAAGGAAGTGTGGATTGGGATTTTCCGACAGACGTCTTCGATGTTGTGATGATGGGACGGTATGGAGAACTCGG
TATTTTGAAACGACCAAAAAAAGAGGACTTTGATAAAGTGGAACAAGCATTGGAAGAAGTCGGTATGCTTTCGTTTGCAC
ACAGACAAATCAGTCAGTTGTCAGGCGGACAACAACAGAGAGTTTTCTTGGCGCGAGCATTGGTTCAAAACGCAGATATC
TACATGATGGATGAACCGTTTCAAGGTGTAGATGCTAAAACGGAAAAATCCATTGTCAGTGTCCTTCAAAGACTTCGTGA
TTTAGGAAAAACGGTAATTGTCGTACATCACGACTTACAAACAGTCAAATCCTATTTTGATGAAGTGACCCTCTTGAATA
TTAAGGTAGTTGCATCCGGACCTGTTCAAGAAGTATTTACGGAAAACAATATCAAACAGACTTACCGCATTGTCTCTCAA
AAGGAGGCAGAACTATGA

Protein sequence : 
MSDKIAIKVEDLTIAYNHTPVLWDIDLTVQKGVLMAIVGPNGAGKSTLIKSMLGFLTPVSGNVLFFGKPYSAVRKRIAYV
PQKGSVDWDFPTDVFDVVMMGRYGELGILKRPKKEDFDKVEQALEEVGMLSFAHRQISQLSGGQQQRVFLARALVQNADI
YMMDEPFQGVDAKTEKSIVSVLQRLRDLGKTVIVVHHDLQTVKSYFDEVTLLNIKVVASGPVQEVFTENNIKQTYRIVSQ
KEAEL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 9e-46 46
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 7e-46 46
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 8e-47 45
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 6e-47 45
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 6e-47 45
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 4e-46 44
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 4e-46 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HMPREF0389_00895 YP_005055031.1 zinc ABC transporter ATP-binding protein BAC0400 Protein 9e-70 61
HMPREF0389_00895 YP_005055031.1 zinc ABC transporter ATP-binding protein BAC0440 Protein 6e-47 46
HMPREF0389_00895 YP_005055031.1 zinc ABC transporter ATP-binding protein BAC0350 Protein 4e-47 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HMPREF0389_00895 YP_005055031.1 zinc ABC transporter ATP-binding protein VFG0526 Protein 4e-47 45