Gene Information

Name : HMPREF0389_00635 (HMPREF0389_00635)
Accession : YP_005054775.1
Strain : Filifactor alocis ATCC 35896
Genome accession: NC_016630
Putative virulence/resistance : Resistance
Product : tetracycline resistance protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1251073 - 1252992 bp
Length : 1920 bp
Strand : -
Note : -

DNA sequence : 
ATGAAAATTATTAATATAGGTGTTTTAGCTCATGTTGACGCAGGAAAAACTACTTTGACAGAAAGCTTACTATATACTAG
TGGAGCGATTGCGGAGTCAGGAAGCGTGGATAGAGGCACAACAAGAACGGATACTACATTTTTAGAACGTCAGCGAGGAA
TTACAATTCAGACAGCAGTAACCTCTTTTCAGTGGAAAGATATTAAGGTAAACATCATAGATACTCCAGGACATATGGAT
TTTTTAGCAGAAGTATATCGCTCGTTATCAGTTTTAGATGGGGCAATCCTACTAATTTCTGCGAGAGATGGAGTACAAGC
ACAAACTCGGATATTATTTCATGCACTAAATAAAATGGGTATTCCCACAATCTTTTTTATCAATAAGATTGACCAAAATG
GGATTGATTTATCAACGGTTTATCAAGATATTAAAGAGAAACTTTCTATGGAAATTATAATCAAACAGAAAGTAGAACTG
CACCCTAATATGTGTGTGATGAGCTGTACGGAATCTGAACAATGGGATACGGTAATAGAAGGAAATGATTACCTTTTGGA
GAAATATATACTTGGGAAATCATTGGAGATATTAGAACTCGAACAAGAGGAAATCAGAAGATTTCAGAATTGCTCCTTGT
ACCCTGTTTATCACGGAAGTGCAAAAAGCAATATAGGGATTGAGCAGCTTATAGAAGTGATAACAAATAAATTTTATTCA
TCAACATACAGAAAGAAGTCTGAACTTTGCGGAAATGTCTTCAAAATTGAATATTCGGAAGAAAGACAACGTCTTGCATA
TGTACGCCTTTATGGCGGTGTCCTGCATTTGCGGGATTCGGTTAGAATATCGGAAAAGGAAAAAATAAAAATTACAGAAA
TGTATACTTCAATAAATGGTGAATTATGTAAAATTGATAAGGCTTATTCCGGGGAAATTGTTATTTTGCAAAATGAGTTT
TTGAAGTTAAATAGTGTTCTTGGAGATACAAAGCTATTGCCACAGAGAGAGAGAATTGAAAATCCGCTCCCTCTGCTGCA
AACAACTGTTGAACCGAGCAAACCTCAACAAAGGGAAATGTTACTTGATGCACTTTTAGAAATCTCCGACAGTGACCCGC
TTCTACGATATTATGTGGATTCTACGACACATGAAATCATACTTTCTTTCTTAGGGAAAGTACAAATGGAAGTGACTTGT
GCTCTATTGCAAGAAAAGTATCATGTGGAGATAAAAATAAAAGAGCCTACAGTCATTTATATGGAAAGGCCGTTAAAAAA
AGCAGAGTATACCATTCACATCGAAGTGCCACCGAATCCTTTCTGGGCTTCCATTGGTCTTTCTGTAGAACCGCTTCCAT
TAGGGAGCGGAGTACAGTATGAGAGCTCGGTTTCTCTTGGATACTTAAATCAATCGTTTCAAAATGCAGTTATGGAAGGG
ATACGCTATGGCTGTGAACAAGGATTGTATGGTTGGAATGTGACGGACTGTAAAATCTGTTTTAAGTATGGCTTATACTA
TAGCCCTGTTAGTACCCCAGCAGATTTTCGGATGCTTGCTCCTATTGTATTGGAACAAGTTTTTAAAAAAGCTGGAACAG
AATTGTTAGAACCATATCTTAGTTTTAAAATTTATGCACCACAAGAATATCTTTCACGAGCATATAACGATGCTCCTAAA
TATTGTGCGAACATCGTAGACACTCAACTGAAAAATAATGAGGTCATTCTTAGTGGAGAAATCCCTGCTCGGTGTACTCA
AGAATATCGTAATGATTTAACTTTCTTTACAAATGGACGTAGCGTTTGTTTAACAGAGTTAAAAGGGTACTATGTTACTA
CTGGTGAATCTGTTTGTCAGCCCCGTCGTCCAAATAGTCGGATAGATAAAGTACGATATATGTTCAATAAAATAACTTAA

Protein sequence : 
MKIINIGVLAHVDAGKTTLTESLLYTSGAIAESGSVDRGTTRTDTTFLERQRGITIQTAVTSFQWKDIKVNIIDTPGHMD
FLAEVYRSLSVLDGAILLISARDGVQAQTRILFHALNKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSMEIIIKQKVEL
HPNMCVMSCTESEQWDTVIEGNDYLLEKYILGKSLEILELEQEEIRRFQNCSLYPVYHGSAKSNIGIEQLIEVITNKFYS
STYRKKSELCGNVFKIEYSEERQRLAYVRLYGGVLHLRDSVRISEKEKIKITEMYTSINGELCKIDKAYSGEIVILQNEF
LKLNSVLGDTKLLPQRERIENPLPLLQTTVEPSKPQQREMLLDALLEISDSDPLLRYYVDSTTHEIILSFLGKVQMEVTC
ALLQEKYHVEIKIKEPTVIYMERPLKKAEYTIHIEVPPNPFWASIGLSVEPLPLGSGVQYESSVSLGYLNQSFQNAVMEG
IRYGCEQGLYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVFKKAGTELLEPYLSFKIYAPQEYLSRAYNDAPK
YCANIVDTQLKNNEVILSGEIPARCTQEYRNDLTFFTNGRSVCLTELKGYYVTTGESVCQPRRPNSRIDKVRYMFNKIT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSU05_0922 YP_001198287.1 translation elongation factor (GTPases) Not tested 89K Protein 0.0 95
SSU98_0928 YP_001200485.1 translation elongation factor (GTPases) Not tested 89K Protein 0.0 95
tetO AFJ97266.1 truncated tetracycline resistant protein Not tested Not named Protein 7e-160 75
tet(W) YP_005160006.1 tetracycline resistance protein Not tested Not named Protein 0.0 69

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HMPREF0389_00635 YP_005054775.1 tetracycline resistance protein AM180355.1.gene636.p Protein 0.0 99
HMPREF0389_00635 YP_005054775.1 tetracycline resistance protein X04388.gene.p01 Protein 0.0 93
HMPREF0389_00635 YP_005054775.1 tetracycline resistance protein M85225.gene.p01 Protein 0.0 92
HMPREF0389_00635 YP_005054775.1 tetracycline resistance protein NC_009782.5559075.p0 Protein 0.0 90
HMPREF0389_00635 YP_005054775.1 tetracycline resistance protein NC_002758.1120355.p0 Protein 0.0 90
HMPREF0389_00635 YP_005054775.1 tetracycline resistance protein L09756.gene.p01 Protein 0.0 80
HMPREF0389_00635 YP_005054775.1 tetracycline resistance protein AJ295238.gene.p01 Protein 0.0 73
HMPREF0389_00635 YP_005054775.1 tetracycline resistance protein AJ222769.gene.p01 Protein 0.0 69
HMPREF0389_00635 YP_005054775.1 tetracycline resistance protein DQ294299.gene.p01 Protein 0.0 69
HMPREF0389_00635 YP_005054775.1 tetracycline resistance protein AY485126.gene.p01 Protein 0.0 69
HMPREF0389_00635 YP_005054775.1 tetracycline resistance protein FN594949.1.gene24.p0 Protein 0.0 68
HMPREF0389_00635 YP_005054775.1 tetracycline resistance protein L42544.gene.p01 Protein 8e-127 44
HMPREF0389_00635 YP_005054775.1 tetracycline resistance protein AJ514254.gene.p01 Protein 5e-122 43
HMPREF0389_00635 YP_005054775.1 tetracycline resistance protein Z21523.gene.p01 Protein 5e-107 41