Gene Information

Name : Desaf_2754 (Desaf_2754)
Accession : YP_005052728.1
Strain : Desulfovibrio africanus Walvis Bay
Genome accession: NC_016629
Putative virulence/resistance : Virulence
Product : Lysyl-tRNA synthetase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3039906 - 3041477 bp
Length : 1572 bp
Strand : +
Note : PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; TIGRFAM: Lysyl-tRNA synthetase, class II; HAMAP: Lysyl-tRNA synthetase; KEGG: dvu:DVU2376 lysyl-tRNA synthetase

DNA sequence :
TTGAGCAATAAGAACCAACCAATTAAGTTGAAGATCAAGTCGGGGAACGTTGACAAGTTTCAGCCGTTCCTGCAGGCCAT
GGCCGCCAAGGGTGAACTCAACGAGGTTCTCAAGAGCCGTGTCGAGAAAGCCGTGCTGCTCATGGATGAAGGCACGCAAC
TCTATCCCAACGGCTTTATCAAGACCGACGACCTTGAGGCTATCTCCACGGAATTTGCAGACACGCCGCCCGAGGCCATG
GAGAGTCTGGAGCGCGAGTTCACCGTGGCCGGTCGCATCGTGGCCATGCGCTCCTTCGGCAAAGCCGCCTTTTTTCACCT
TCAGGATCCCACGGGCCGCTTGCAGGTTTTTGCCTCGCGCGATGATCTGGGGGAGGATGCCTATCGCGTATTCAAGAAGC
TGGACATGGGCGATCTCGTCGGTGTCCGTGGCACGCTTTTCCACACCAAGACTGGCGAGCTAACCCTTAAGTCCTCGCAG
ATCACGCTACTGACCAAGTCCCTGCGCCCGCTGCCCGACAAGTGGCACGGACTCAAGGACGTGGAGATGCGCTACCGCCA
GCGCTATGTTGATCTCATTGTCACGCCCAGAACGCGGGAGATATTCCTCAAGCGTACCCAGGTCGTGCGTGAGATGCGCA
ATTTCCTGGACCGGGAGGGCTTCATGGAGGTGGAAACACCCATGATGCAGCCCATCCCCGGCGGAGCGACGGCCAAGCCC
TTTGAAACGCATCATAACGCGCTGGACATGAAGCTCTACATGCGCATTGCGCCCGAGCTTTATCTCAAGCGCTTGCTGGT
GGGCGGCTTCGAGAAGGTTTACGAGGTCAATCGCAATTTTCGCAACGAAGGCATCTCCACCCAGCACAATCCTGAATTCA
CCATGTGCGAGTTCTACTGGGCATACGCGACCTTCGAGGATCTCATGGATCTCACGGAGCGCATGTTCGCCCACATCGCC
CAGCAGGTGACCGGAAACACCGTAGTGGAGTACCAGGGGCAGCAGATCGACCTGACGCCCGGCAAGTGGGCCCGAGTACC
CTTTCTGGAGTCCTTGCGCACCATAGGCGGGTTGTCGCCCGAAGTGTACATGGATATGGCCAAGGCCAAGGCCCTGGTAC
GCGAGCGCGGGGAGAAGGTCTTGGAGAGCGACAAGCTTGGCAAGGTGCAGGCCATGCTTTTCGACATGTTCGTGGAGCCG
AAGCTCGTGCAGCCGCATTTCATATACCATTATCCCACGGATATTTCGCCCCTGTCGCGGCGCAACGACCAGGACCCGAC
CATCACCGACCGTTTCGAGCTGTTCATGTCCGGACGGGAGATGGCCAACGCCTTCTCGGAACTCAATGACCCCGTGGATC
AGCGCCTGCGCTTCATGGAGCAGGTCCAGGAAAAGGAAGCCGGCGACGAGGAGGCCCACTACATGGACGAAGATTACGTT
CGAGCCTTGGAGTACGGCATGCCGCCGGCTGCAGGGCAGGGCATCGGCATTGACCGCCTGGTTATGCTGCTTACCGATTC
GCCATCCATTCGCGAGGTCATCCTGTTCCCGCTCCTGCGCCCGGAAGCATAA

Protein sequence :
MSNKNQPIKLKIKSGNVDKFQPFLQAMAAKGELNEVLKSRVEKAVLLMDEGTQLYPNGFIKTDDLEAISTEFADTPPEAM
ESLEREFTVAGRIVAMRSFGKAAFFHLQDPTGRLQVFASRDDLGEDAYRVFKKLDMGDLVGVRGTLFHTKTGELTLKSSQ
ITLLTKSLRPLPDKWHGLKDVEMRYRQRYVDLIVTPRTREIFLKRTQVVREMRNFLDREGFMEVETPMMQPIPGGATAKP
FETHHNALDMKLYMRIAPELYLKRLLVGGFEKVYEVNRNFRNEGISTQHNPEFTMCEFYWAYATFEDLMDLTERMFAHIA
QQVTGNTVVEYQGQQIDLTPGKWARVPFLESLRTIGGLSPEVYMDMAKAKALVRERGEKVLESDKLGKVQAMLFDMFVEP
KLVQPHFIYHYPTDISPLSRRNDQDPTITDRFELFMSGREMANAFSELNDPVDQRLRFMEQVQEKEAGDEEAHYMDEDYV
RALEYGMPPAAGQGIGIDRLVMLLTDSPSIREVILFPLLRPEA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD66193.1 putative lysil-tRNA synthetase LysU Not tested PAI III 536 Protein 2e-115 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desaf_2754 YP_005052728.1 Lysyl-tRNA synthetase VFG1668 Protein 1e-115 50