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Name : Desaf_1234 (Desaf_1234) Accession : YP_005051232.1 Strain : Desulfovibrio africanus Walvis Bay Genome accession: NC_016629 Putative virulence/resistance : Virulence Product : general secretory pathway protein E Function : - COG functional category : - COG ID : - EC number : - Position : 1364633 - 1366393 bp Length : 1761 bp Strand : + Note : TIGRFAM: Type II secretion system gspE; PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal; KEGG: dma:DMR_28380 general secretion pathway protein E; SMART: ATPase, AAA+ type, core DNA sequence : ATGAGCGTCACGCTGCGCGAACAAATGGGCCGTGTGCGGGCCATGCTGAACCCCGCCGACTCAAGCGACGCGAAGCTCTC CGGTGAAGTCGGGTCAGGTCAGGTGAGACTCGACAATGATGCGCCGTTCCAGACCTATCCGCCTCCTTCGCTCGGCAAGC CGGACTCCGGCGGCCGGGAGCCAAGCCCCGAGGAACTGGCCCTGGAGCTGGGCCTGCGCTTCGTGCCGCACGTGGAGGAG GGCTGGCTGGATCTGTCCCTGGTGCGCGGACTGCCCATCGCCTACCTAAAGCAGAACCTCGTGCTTCCGGTAAAGGGAGA GGCCGGCTGTCTGCTTGTGCTCGTGGGCAACCCGCTGCGCGTGGAGGTCATGGACGAGCTTCGCCTGATTCTTACTGATG GAGGGGCGGACGGCAGGGCAAAGGCCGAAGTGAATTTCGCCATGGCTCCGGCCGAGGTCATCCTGGAAGCCATCAACCAG ACCTTTGCCCAGGCCGACAGCCGGGCCGACCAGATCATCCAGGACCTGGGCGTGGAAGAGGACGACGACCGGCTGCTCTC GGAGCTGGAGCGCGGCGGCAGCGAGGACCTGCTGGACGAGACGTCCAACGCGCCGGTCATCAAGCTCGTGAACCACATCC TGGCCCAGGCCGTAAAGAGCCGGGCCAGCGACATCCACGTCGAGCCCTTCAAGAACGAGCTGCTGGTGCGCTTCCGCCTG GACGGCGTGCTGCACAACATTCTGCACCTGCCCAAACGGCTGCAGGCCCCCGTGGCCTCGCGCATCAAGATCATGGCCAA GCTGAACATCGCCGAGAAGCGTTTGCCCCAGGACGGCCGCATCGAGGTGCGCATCGGCAACCGTCAGGTGGACCTGCGCG TGTCCAGCCTGCCCACGGCTTTCGGCGAGCGCGTGGTCATGCGCCTGCTGGAGAAAAACGCGCGCCTGCTGTCCTTGGAG GAGCTGGGCATGGGCCCGGACCACCACGCGGAGATGCGCCGCCTGACTCAGCTTTCGCACGGCATCATCCTGGTCACCGG CCCCACGGGCAGCGGCAAGACCACCACGCTCTACGCGGCCCTGTCCTCCATCAATTCGCCGGACAAAAACATCCTGACTA TCGAGGACCCCATCGAGTATCAGCTCGACGGCATCGGTCAGATGCAGGTCAACGCCAAGATCGACCTGACCTTCGCCAAG GGCTTGCGCTCCATGGTTCGCCAGGACCCGGACGTGATCCTGGTGGGCGAGATACGCGACCGCGAAACGGCCGAGATCGC CATCCAGGCCTCGCTCACGGGCCACCTCGTCTTCTCCACCCTGCACACCAACGACGCGCCCAGCGCCGTGACCCGGCTCA TCGACATCGGCATCGAGCCTTTCCTGGTCTCCTCGGCCGTGCGCACCATCATCGCCCAGCGCCTCGTGCGCGTGCTCTGC CCCGCGTGCAAGCGCGAGGACACGCCCACGGCCAAGGAATTGCGCGAGATGGGTCTATGCGGGGACGCCGCGTCCGTGGT GCACCGCGCCGTGGGCTGTTCCGAGTGCATGCAGACCGGCTATCGCGGCCGGACATCCATCTATGAGTTCATGCGCCTGA CCGAGTCCTTGCAGGATCTCGTCGTGCGCAACTCGGACGCCAACCAGATCCGCAAGCTGGCCCTGAGCGAGGGCATGTGC ACGCTGCGCCAGGACGGCATCCGCCGGGTCCTGAATGGCGTGACCACTCTCGATGAGGTCATGCGCGTGACCCTGCTGTA A Protein sequence : MSVTLREQMGRVRAMLNPADSSDAKLSGEVGSGQVRLDNDAPFQTYPPPSLGKPDSGGREPSPEELALELGLRFVPHVEE GWLDLSLVRGLPIAYLKQNLVLPVKGEAGCLLVLVGNPLRVEVMDELRLILTDGGADGRAKAEVNFAMAPAEVILEAINQ TFAQADSRADQIIQDLGVEEDDDRLLSELERGGSEDLLDETSNAPVIKLVNHILAQAVKSRASDIHVEPFKNELLVRFRL DGVLHNILHLPKRLQAPVASRIKIMAKLNIAEKRLPQDGRIEVRIGNRQVDLRVSSLPTAFGERVVMRLLEKNARLLSLE ELGMGPDHHAEMRRLTQLSHGIILVTGPTGSGKTTTLYAALSSINSPDKNILTIEDPIEYQLDGIGQMQVNAKIDLTFAK GLRSMVRQDPDVILVGEIRDRETAEIAIQASLTGHLVFSTLHTNDAPSAVTRLIDIGIEPFLVSSAVRTIIAQRLVRVLC PACKREDTPTAKELREMGLCGDAASVVHRAVGCSECMQTGYRGRTSIYEFMRLTESLQDLVVRNSDANQIRKLALSEGMC TLRQDGIRRVLNGVTTLDEVMRVTLL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 1e-106 | 48 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 1e-106 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Desaf_1234 | YP_005051232.1 | general secretory pathway protein E | VFG0182 | Protein | 4e-110 | 54 |
| Desaf_1234 | YP_005051232.1 | general secretory pathway protein E | VFG2048 | Protein | 2e-106 | 47 |
