Gene Information

Name : Desaf_1136 (Desaf_1136)
Accession : YP_005051138.1
Strain : Desulfovibrio africanus Walvis Bay
Genome accession: NC_016629
Putative virulence/resistance : Virulence
Product : two component transcriptional regulator, winged helix family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1250905 - 1251582 bp
Length : 678 bp
Strand : -
Note : KEGG: dma:DMR_37840 OmpR family two-component response regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region

DNA sequence : 
ATGCGCATTCTGGTGATCGAGGATGACCTGGAGGCCGCCTCCTACATGCTCAAGGGCCTGCGGGAGAGCGGCCATGTGGT
GGAGCACGCGGCCGACGGCAAGGACGGTCTGTACATGGCCGCCGCCGGAAGCTACGACGCCATGGTCGTTGACCGCATGC
TGCCGGGCGTGGACGGGCTGACCATCGTCAAGACGTTGCGTTCGACCGGCAACGCCACGCCCGTGCTGTTTCTTTCGGCC
ATGGGCGAGGTGGACGACCGCGTGCGCGGCCTCAAGGCCGGCGGCGACGACTACCTGACCAAGCCGTATGCCTTTGCCGA
GCTGCTGGCGCGGCTGGAGGCCCTGGACCGCCGCGCCGGGGCCGTGACCGGCGGCACCATGCTCAAGGTCGCTGACCTGG
AAATGGACCTGGTGGGACGCAGCGTGCGCCGCGCGGGCCGGAGCATAGAGCTGCAGCCCAAAGAGTTCGCCCTGCTCGAA
TACCTCATGCGTCACGCCGGACAGGTGGTCACGCGCACCATGCTCCTGGAAAACGTCTGGGACTACAGCTTCGACCCGCA
GACAAACGTCATCGACGTGCACATCAGCCGCCTGCGCCAAAAGATAGACAAAGATTTCGACCGCCCGCTCCTGCACACCG
TGCGCGGCTCGGGTTACTCCCTGCGTGATGCCCGTTAG

Protein sequence : 
MRILVIEDDLEAASYMLKGLRESGHVVEHAADGKDGLYMAAAGSYDAMVVDRMLPGVDGLTIVKTLRSTGNATPVLFLSA
MGEVDDRVRGLKAGGDDYLTKPYAFAELLARLEALDRRAGAVTGGTMLKVADLEMDLVGRSVRRAGRSIELQPKEFALLE
YLMRHAGQVVTRTMLLENVWDYSFDPQTNVIDVHISRLRQKIDKDFDRPLLHTVRGSGYSLRDAR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-41 46
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-40 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desaf_1136 YP_005051138.1 two component transcriptional regulator, winged helix family BAC0125 Protein 2e-49 52
Desaf_1136 YP_005051138.1 two component transcriptional regulator, winged helix family BAC0347 Protein 2e-47 50
Desaf_1136 YP_005051138.1 two component transcriptional regulator, winged helix family BAC0111 Protein 3e-50 50
Desaf_1136 YP_005051138.1 two component transcriptional regulator, winged helix family BAC0083 Protein 3e-48 49
Desaf_1136 YP_005051138.1 two component transcriptional regulator, winged helix family BAC0638 Protein 4e-40 48
Desaf_1136 YP_005051138.1 two component transcriptional regulator, winged helix family BAC0197 Protein 2e-44 47
Desaf_1136 YP_005051138.1 two component transcriptional regulator, winged helix family BAC0308 Protein 1e-43 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desaf_1136 YP_005051138.1 two component transcriptional regulator, winged helix family VFG0596 Protein 8e-42 46
Desaf_1136 YP_005051138.1 two component transcriptional regulator, winged helix family VFG1389 Protein 3e-33 46
Desaf_1136 YP_005051138.1 two component transcriptional regulator, winged helix family VFG1390 Protein 2e-36 43