Gene Information

Name : Clocl_0559 (Clocl_0559)
Accession : YP_005045194.1
Strain : Clostridium clariflavum DSM 19732
Genome accession: NC_016627
Putative virulence/resistance : Unknown
Product : transposase, IS30 family
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 637828 - 638898 bp
Length : 1071 bp
Strand : -
Note : PFAM: Integrase core domain

DNA sequence :
ATGGTTATCAAAACTAATAATAACACAACTAAACGTAAATTTAAACACCTAAATGTTTATGAACGTGGACAAATTGAAGC
TTTCATTAAGGAAGGGAAATCACAACGCTATATTGCTAAAATGCTAGGTCGTTCACCAAGTACGATCAGTCGTGAGATTA
AAAGAGGTACAACGATTCAAATGAGGCATGATTTAACGACATATAGAAAGTATTTTGCTGAAAGTGGGCAGATAGCTTAT
GAAAAAAATCGTTTGAATTGCGGTGCAAAGTGTAAATTAGCTAGAGTTGAAGATTTCATAAAATTTGCAGAAGAAAAAAT
ACTATATGAAAAATGGTCACCAGATGCCGTAGTTGGCTCATGTATAGTGAATTCTAAGTGGATGCATTCTACTATTGTAT
GTACTAAAACCTTATATAATTATATAGACCAAGGGCTGCTGAAAGTACGAAATATTGATTTAAACCTTAAACTTCGAATA
AAACCAAAAGTAAGAAGAGACCGTCAGAATAAACGTATTCTGGGAAAAAGCATCGATCAAAGGCCAGAAGATGTGCAACT
ACGGCAGACTTTTGGACATTGGGAAATTGATACAATCATAGGGAGAAAATCTAGCGATACAGTTATTTTAACATTAACAG
AACGAAAGACACGCTATGAACTGCTGTTTCTTTTAGAAGCAAGAGATAGTAATGCTGTTAACAAGGCACTTTTGGAACTA
AAGAATTTCTATGGAGAACAGTTTTGTAACATATTTCGTACTATTACAGCAGACAATGGTTCAGAATTTAGTAGATTGAC
AGAAATATTACAACCATTAGGGATAGAAGTATACTATGCACATCCTTATTCCTCATGGGAAAGAGGTACTAATGAACGTC
ATAATGGTCTTATACGGCGTTTTATACCTAAAGGGAAAGCAATAAGAGATTTTACAGCGACAACAATAAAACGTATACAA
GACTGGTTAAATAATCTTCCACGCAAGATATTAGATTATAAAACGCCTGAAGAATGCTTTAATGAAGAGCTGTTTAAAAT
AGTTAATGATGATACATCAAAAACAGCTTAA

Protein sequence :
MVIKTNNNTTKRKFKHLNVYERGQIEAFIKEGKSQRYIAKMLGRSPSTISREIKRGTTIQMRHDLTTYRKYFAESGQIAY
EKNRLNCGAKCKLARVEDFIKFAEEKILYEKWSPDAVVGSCIVNSKWMHSTIVCTKTLYNYIDQGLLKVRNIDLNLKLRI
KPKVRRDRQNKRILGKSIDQRPEDVQLRQTFGHWEIDTIIGRKSSDTVILTLTERKTRYELLFLLEARDSNAVNKALLEL
KNFYGEQFCNIFRTITADNGSEFSRLTEILQPLGIEVYYAHPYSSWERGTNERHNGLIRRFIPKGKAIRDFTATTIKRIQ
DWLNNLPRKILDYKTPEECFNEELFKIVNDDTSKTA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CPR_0383 YP_697712.1 IS1470, transposase Not tested Not named Protein 9e-75 51
CPR_0628 YP_697955.1 IS1470, transposase Not tested Not named Protein 1e-74 51
CPR_0379 YP_697708.1 IS1470, transposase Not tested Not named Protein 6e-75 51
CPR_1088 YP_698410.1 IS1470, transposase Not tested Not named Protein 9e-74 50
CPR_0314 YP_697643.1 IS1470, transposase Not tested Not named Protein 2e-74 50
CPR_0967 YP_698290.1 IS1470, transposase Not tested Not named Protein 2e-74 50
CPR_0648 YP_697974.1 IS1470, transposase Not tested Not named Protein 1e-73 50
CPR_0321 YP_697650.1 IS1470, transposase Not tested Not named Protein 6e-74 50
CPR_1078 YP_698400.1 IS1470, transposase Not tested Not named Protein 3e-74 50
CPR_0659 YP_697986.1 IS1470, transposase Not tested Not named Protein 8e-50 47