Gene Information

Name : Clocl_4133 (Clocl_4133)
Accession : YP_005048488.1
Strain : Clostridium clariflavum DSM 19732
Genome accession: NC_016627
Putative virulence/resistance : Unknown
Product : single stranded DNA-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4772041 - 4772451 bp
Length : 411 bp
Strand : -
Note : PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb)

DNA sequence :
ATGAATAAGGTTATTTTGATGGGAAGATTAACACGAGATCCCGAATTAAGGTATACCAGCAATAATTTGGCTGTATGCAG
TTTTACGCTGGCAGTCAATAGAGGGTTTGCAAAGCAAGGAGAAGAAAGACAGGCTGATTTTATTCCTATCGTTGTATGGG
ACAAACAGGCTGAGTTTTGCTCCAAGTATTTTACAAAAGGCCTTCAAGTTGCAGTAGTGGGCAGAATACAGGTTAGGTCT
TGGGATGATAATGAAGGTAAAAAACGTTATACAACGGAAGTAGTAGCTAATGAAGTGTATTTTGCCGACAGCAAGAAAAG
CGATATAGCTGATAAAGTGCAAGACCCGCAATTGGCTGAGCCGGCTGACGGATTTTATCCTTTGGAAGAAGATGATGAAT
TACCGTTTTAA

Protein sequence :
MNKVILMGRLTRDPELRYTSNNLAVCSFTLAVNRGFAKQGEERQADFIPIVVWDKQAEFCSKYFTKGLQVAVVGRIQVRS
WDDNEGKKRYTTEVVANEVYFADSKKSDIADKVQDPQLAEPADGFYPLEEDDELPF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SH1792 YP_253707.1 single strand DNA binding protein Not tested ¥ÕSh1 Protein 2e-21 52
SEQ_0802 YP_002746140.1 single-strand binding protein Not tested ¥ÕSeq2 Protein 7e-20 49
SAV0864 NP_371388.1 ssDNA-binding protein Not tested ¥ÕSa1 Protein 3e-22 49
SAOV_0290 YP_005735807.1 Single-stranded DNA-binding protein, phage associated Not tested ¥ÕSa1 Protein 6e-23 45
SAOV_1081 YP_005736576.1 ssDNA-binding protein Not tested ¥ÕSa2 Protein 6e-23 43
EFAU085_00699 YP_008394223.1 single-strand binding protein Not tested Not named Protein 9e-23 42
SAOV_1956c YP_005737400.1 Single-stranded DNA-binding protein, phage associated Not tested ¥ÕSa3 Protein 9e-19 41