Gene Information

Name : Clocl_3797 (Clocl_3797)
Accession : YP_005048171.1
Strain : Clostridium clariflavum DSM 19732
Genome accession: NC_016627
Putative virulence/resistance : Resistance
Product : antimicrobial peptide ABC transporter ATPase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4416588 - 4417271 bp
Length : 684 bp
Strand : -
Note : PFAM: ABC transporter

DNA sequence :
TTGAGTTTGAGTTTGGCAGTTGAAATACATAACCTTTATAAAACATATAAACTTGGTTCTATAGAAGTTGAAGTATTAAA
AGGTATTAATCTGTCAGTTGAAAAGGGGGAATTTGTTTCAATTATGGGACCTTCCGGTTCGGGTAAGAGTACACTTTTAT
ATTTAATAGGTGGACTTGACAAGTCGTCTTCAGGAAGTATAAAAGTCAATGGAAGAGAACTCTCTAATATGACAGACAGA
ATTGAAAGTCTGATGAGAAGAAGAGAAATAGGGTTTGTTTTTCAATTTTACAACCTTATTCCCAATTTAAATGTGGAAGA
AAATATTATGCTTCCAATTTTATTAGATGGGAAGAAAATAAAACACTATAAAGACAGGTTAGAAGAGCTTTTAAGTATAG
TCGGTCTTTCAAATAGGCGGCATCATACTCCTAGAGAATTGTCTGGTGGACAACAGCAAAGGGTTGCAATTGCAAGAGCA
TTGATAAACGAACCTGACATTATTCTTGCTGATGAACCTATTGGTAATCTCGATAGTAAATCAGGTACTGAAATCATGGA
ACTCTTGAGAAGGATAAACAGGGAAAAGGGTAAGACAATAATTCAAGTGACCCATTCAAGGGAAGCAGCTGAATATGGGA
ATAGAATAATAAATGTTAAAGATGGGAGAGTTGATTTACTATGA

Protein sequence :
MSLSLAVEIHNLYKTYKLGSIEVEVLKGINLSVEKGEFVSIMGPSGSGKSTLLYLIGGLDKSSSGSIKVNGRELSNMTDR
IESLMRRREIGFVFQFYNLIPNLNVEENIMLPILLDGKKIKHYKDRLEELLSIVGLSNRRHHTPRELSGGQQQRVAIARA
LINEPDIILADEPIGNLDSKSGTEIMELLRRINREKGKTIIQVTHSREAAEYGNRIINVKDGRVDLL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-35 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-36 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-36 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-36 42
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 7e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clocl_3797 YP_005048171.1 antimicrobial peptide ABC transporter ATPase CP001581.1.gene798.p Protein 3e-51 53
Clocl_3797 YP_005048171.1 antimicrobial peptide ABC transporter ATPase CP001581.1.gene598.p Protein 4e-47 52
Clocl_3797 YP_005048171.1 antimicrobial peptide ABC transporter ATPase NC_012469.1.7686878. Protein 7e-47 50
Clocl_3797 YP_005048171.1 antimicrobial peptide ABC transporter ATPase NC_008702.1.4606598. Protein 3e-38 44