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Name : Clocl_3622 (Clocl_3622) Accession : YP_005048015.1 Strain : Clostridium clariflavum DSM 19732 Genome accession: NC_016627 Putative virulence/resistance : Unknown Product : HsdR family type I site-specific deoxyribonuclease Function : - COG functional category : - COG ID : - EC number : - Position : 4246871 - 4250068 bp Length : 3198 bp Strand : - Note : PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Domain of unknown function (DUF3387); Type III restriction enzyme, res subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family DNA sequence : ATGCCGAGCCATAATATATATGAGGATGAATTGGAGCAGGCTGCATTGGAATGGTTTGAGGAACTTGGTTATGAAACCAT TTTTGCGCCTGATATCTCGCCTGGTGGGGATTATCCTGAACGTTCTGATTATTCAGATGTTATTCTGGAAGAACGTCTTA AAGATGCTTTAAAGCGCATAAATCCTGATTTACCGCAGGAAGCTCTTGATGACGCTCTGCATCAAATACTTGTACCTCTT AATCCTGCTCTGATAGACAATAATCATCTTTTTCAGAAGATGGTCACTGATGGAGTGAATGCTACCTTCAGAGCTAATGA TGGCAGGATAGTAAGTAAACAGGTCAGGATTTTTGATTTTGAGAAAGCAGAGAACAATGATTTTTTAGCTGTTAACCAGT TTACTGTGATTGAAAACAGAGTTGAAAAGCGTCCTGATGTGGTGGTGTTTGTAAATGGTATCCCCCTTGTAGTTATCGAA CTGAAAAATTTGGCCAATGAGGATGTAGAAATATCCGATGCATATAATCAGATCCAGAATTATATAAGCACCATTCCATC TTTATTTACTTATAATGCTTTTGCAGTTATATCCGATGGAGTTAATGCAAGAGCAGGCACAATCACTGCTGATGAAGACC GGTTCATGATGTGGAGGACGATTGATGGGGATGAAATAGCACCTTTAAGCCGCCCACAGCTTGAAGTCCTGATCAAAGGT ATGTTTGATAAGGAACGCCTTCTTGATATCATTAAGAACTTTATACTGTTCCAGACTGACGGGAAGGACACATATAAAAT TCTTGCCGGTTACCACCAGTATCATGCTGTTAACAAGGCGGTTGAGAGTACAATAAGAGCTGCCATCACTGAAGGGGATC GTAAAATCGGTGTTGTTTGGCATACCCAGGGAAGTGGTAAAAGTCTTTCCATGGTCTTCTATGTTGGCAAGCTTGTTTTG TCAAAAGAACTTAACAACCCTACAATCGTAGTGATTACTGATCGTAACGACCTTGACGACCAACTGTTTTCCACCTTTGC TAAATCAAAAGATTTATTGCGCCAAGAACCGGTTCAGGCTCAGGACAGAGCGGATCTTCGAAAGCTCCTGACAAGGGAAT CTGGAGGCATTATCTTTACAACCATACACAAATTTGCTCCTGAAGAAAAAGGAGACAGCGTGCCAGTTTTAACAGACCGG GAAAATGTAATTGTAATAGCTGACGAAGCGCATCGAAGCCAATACGGATTCAGGGCGGAAATTGTTAAGGGTGATACAGA AGCTGATGTAAAATACGGTTATGCAAAATATATGCGTGATGCCCTTCCAAATGCGTCTTTCATTGGATTTACCGGTACAC CCATATCTCTTGCTGACAAGGATACCAGAGCAGTTTTTGGCGATTATATCGACATTTACGATATGACCAGGGCTGTTGAG GATGGAACAACGGTACGCATATTCTATGAAAGCCGGATAGCGAAGCTGGAACTGCCCGATGAGCTTAAGCCTGTTATTGA CGATGAATACGAAGAAATCACCGAATATCAGGAATATACCCAGAAAGAAAAGCTTAAGACCAAATGGTCAAGACTTGAAG CCATCGTTGGCGCCGAGCAACGGGTTAAAGCCATTGCCAAAGACATCGTGGAGCACTTTGAAAAGCGCCTTGCCGCACAG GAAACAGAAGTGGGCAAGGGTATGATCGTGGTTATGTCACGTAGAATTGCAATTGACTTATATAAAGCCATTGTTGAACT GCGTCCCGAATGGCATTCAGACGATATTGACAAAGGTGTTATCAAGGTGGTCATGACCGGAAGTTCTTCCGACCCAAAGG AATGGCAGCCTTTCATTGGTACCAAAGCTACCAGGGAGCGTATCGCCAAACGAATGAAGGACAACAAGGATGAACTGAAG CTGGTCATTGTGCGAGACATGTGGCTGACAGGCTTTGATGTGCCCAGCATGCACACCATGTATATCGACAAACCCATGCA GGGACACAATCTTATGCAGGCTATCGCCCGCGTTAACCGTGTATTCAAAGAGAAGCAGGGAGGATTGATTGTAGACTACA TCGGCATTGCCGAAAATCTTAAGAATGCACTCAATGATTATACCGAAAGCGACAGGGAAAAGACTGGTGTTGACACTGAA GTGGCAGCGGCAGTCCTTGTTGAAAAGTATGAACTGATTAAGGAATTACTTCATGGTCATGATTATCAGAAGTTCTTTAC CGGCTCTGCTTCCGAAAGAATGTCTGCCATTGTTGAAACAATCGACTACATCATCGGATTGCGCGAGGAGCGCAAAAACG ATTATCTTAAGCTGGTCAGTGAGCTGTCAAGAGCTTACTCCCTTTGCGCGACTACTGATATTGCTGAGAAATTGAATCTT GAGGTAGGTTTCCATAAAGCGGTTAAATCCGGTATTATCAAGCTTATACCCGAAAATTCCAGGAAGAAAACTGCTGCAGA AATTGAAGCACAACTTAACCAACTTGTTTCCAAATCAATATCCAGCAATGAGGTTATCGATGTCTTGGATGCCGTTGGGC TAAACAAGCCGAATATTGCTATACTCTCAGATGAGTTCCTGGAAGAAGTGCGTAACATGAAACAGCGTAACCTTGCTGTC GAACTTCTTAATAGATTACTTAAGGGCAAAATTAAGACATTCTCAAAACGGAACCTAGTTCAGTCCAGAAAATTTTCAGA ACTATTGGAGAATGCCATCAGAAAGTACCAGAATCGCACAATAGAAACCACTCAGGTTATTCTGGAGCTTATACAGCTTG CAAAGGAAATTAATGAAGCACATAAGCGTGGAGAAAACACAGGCCTTACTGAAGATGAACTGGCATTTTACGATGCCCTC GCTGAAAATGAGTCTGCAAAAGAGGTTATGGGTGACGATATCCTCAAGCAAATAGCCAGGGACTTGACTGAAGCAATACG TAAGAACATAAGCATTGACTGGTCTATACGTGCCAGCGTTCAAGCAAAGATGAAAATGATTATAAAGAGGCTGCTTAAGC GCTATGGTTATCCTCCGGACAAAACACCAAAGGCTGTAGAAATCGTAATGGAACAGGCCAAGCTTATGTGTCAAAACGAG AGTTCCGGGGTTAGGTATCAGTACCAGCTTGAAAAAGAAGATCTGCCAAAAGTAGCGGAGGATAGTTTTGACATATAG Protein sequence : MPSHNIYEDELEQAALEWFEELGYETIFAPDISPGGDYPERSDYSDVILEERLKDALKRINPDLPQEALDDALHQILVPL NPALIDNNHLFQKMVTDGVNATFRANDGRIVSKQVRIFDFEKAENNDFLAVNQFTVIENRVEKRPDVVVFVNGIPLVVIE LKNLANEDVEISDAYNQIQNYISTIPSLFTYNAFAVISDGVNARAGTITADEDRFMMWRTIDGDEIAPLSRPQLEVLIKG MFDKERLLDIIKNFILFQTDGKDTYKILAGYHQYHAVNKAVESTIRAAITEGDRKIGVVWHTQGSGKSLSMVFYVGKLVL SKELNNPTIVVITDRNDLDDQLFSTFAKSKDLLRQEPVQAQDRADLRKLLTRESGGIIFTTIHKFAPEEKGDSVPVLTDR ENVIVIADEAHRSQYGFRAEIVKGDTEADVKYGYAKYMRDALPNASFIGFTGTPISLADKDTRAVFGDYIDIYDMTRAVE DGTTVRIFYESRIAKLELPDELKPVIDDEYEEITEYQEYTQKEKLKTKWSRLEAIVGAEQRVKAIAKDIVEHFEKRLAAQ ETEVGKGMIVVMSRRIAIDLYKAIVELRPEWHSDDIDKGVIKVVMTGSSSDPKEWQPFIGTKATRERIAKRMKDNKDELK LVIVRDMWLTGFDVPSMHTMYIDKPMQGHNLMQAIARVNRVFKEKQGGLIVDYIGIAENLKNALNDYTESDREKTGVDTE VAAAVLVEKYELIKELLHGHDYQKFFTGSASERMSAIVETIDYIIGLREERKNDYLKLVSELSRAYSLCATTDIAEKLNL EVGFHKAVKSGIIKLIPENSRKKTAAEIEAQLNQLVSKSISSNEVIDVLDAVGLNKPNIAILSDEFLEEVRNMKQRNLAV ELLNRLLKGKIKTFSKRNLVQSRKFSELLENAIRKYQNRTIETTQVILELIQLAKEINEAHKRGENTGLTEDELAFYDAL AENESAKEVMGDDILKQIARDLTEAIRKNISIDWSIRASVQAKMKMIIKRLLKRYGYPPDKTPKAVEIVMEQAKLMCQNE SSGVRYQYQLEKEDLPKVAEDSFDI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 56 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 56 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 56 |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 50 |
