Gene Information

Name : Clocl_3179 (Clocl_3179)
Accession : YP_005047625.1
Strain : Clostridium clariflavum DSM 19732
Genome accession: NC_016627
Putative virulence/resistance : Resistance
Product : antimicrobial peptide ABC transporter ATPase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3727932 - 3728600 bp
Length : 669 bp
Strand : -
Note : PFAM: ABC transporter

DNA sequence : 
ATGGTTCTATGCCAAAATGTTTTCAAAGAGTTTAAGGCCGGTACTTCATTCGTCGCTGTTAATAACGTTTCATTGCATGT
AAAAACAGGAGAGTTTGTTTCAATAATAGGAAAGTCAGGAAGCGGCAAATCGACATTATTAAATCTAATTGGATTAATCG
ACAAACCGACCTCCGGGAACATTTTTATTGATGGCATAGATTCTTCTAATATGGTTGAATCGCAACTTGCCAGAATCAGA
TGCGAAAAACTTGGATATATTTTTCAATCATTTTATCTTGATCATAATTATTCAGTTTATAAGAACGTGGAGATACCTCT
ATTGATTGCAAACATGCCATCCAACAAGCGTCGAGAAAGAGTAGAAACATGTCTTGAACAAGTAGGAATGTTGAATAAAC
TACACTCAAAAACCAGTACATTATCAGGTGGCGAAAAGCAACGTGTATGTATTGCAAGGGCTTTAGCTAATAATCCGAGC
TTGTTATTGGCAGATGAACCTTGTGGAAATTTAGACTCTGAAAATACCCAAGTAATTATGGAAATTTTTCAAGTCCTCAA
CCAAAAAGGTGTAACAATTATTATGGTAACCCATGATATTGAAGATGCAAAAAAAGCCAATCGCATTATCACAATGAAGG
ATGGTAAAATAATTAGCGATGAAAATTAA

Protein sequence : 
MVLCQNVFKEFKAGTSFVAVNNVSLHVKTGEFVSIIGKSGSGKSTLLNLIGLIDKPTSGNIFIDGIDSSNMVESQLARIR
CEKLGYIFQSFYLDHNYSVYKNVEIPLLIANMPSNKRRERVETCLEQVGMLNKLHSKTSTLSGGEKQRVCIARALANNPS
LLLADEPCGNLDSENTQVIMEIFQVLNQKGVTIIMVTHDIEDAKKANRIITMKDGKIISDEN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 9e-25 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clocl_3179 YP_005047625.1 antimicrobial peptide ABC transporter ATPase NC_012469.1.7686878. Protein 1e-40 47
Clocl_3179 YP_005047625.1 antimicrobial peptide ABC transporter ATPase CP001581.1.gene798.p Protein 3e-27 44
Clocl_3179 YP_005047625.1 antimicrobial peptide ABC transporter ATPase NC_012469.1.7686946. Protein 3e-21 43
Clocl_3179 YP_005047625.1 antimicrobial peptide ABC transporter ATPase CP001581.1.gene598.p Protein 5e-28 41
Clocl_3179 YP_005047625.1 antimicrobial peptide ABC transporter ATPase NC_008702.1.4606598. Protein 7e-31 41