Gene Information

Name : Clocl_3127 (Clocl_3127)
Accession : YP_005047578.1
Strain : Clostridium clariflavum DSM 19732
Genome accession: NC_016627
Putative virulence/resistance : Virulence
Product : chaperone ATPase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3661719 - 3664082 bp
Length : 2364 bp
Strand : -
Note : PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ATPase family associated with various cellular activities (AAA)

DNA sequence :
ATGATGATGTGCTCTATATGTAAAGAAAATATAGCAGTAGTATTTATAACAAAGATTTTGGACGGCAAGCAAACCCAGGA
AGGTTTATGTTTTTCTTGTGCCAGAAAACAGGGAATTCAGCCCATAAAGCAGATTATTGAGCAGACAGGTATTTCTGAAG
AAGAAATGGAAGATTTAAATAAACAGATGGGAAGTTTTTTTGAAGAACTTGATATAAATAATTTAGGCAGTATGGTTACA
GAACCGGGTTCGGGCAGTTCAAACCCTTTTCTGAACTTTTTCAATAAAACCTTATTTAAGAACAATGAAGCATCGGGCAG
TAAAGACAGTGAATCGAAAGATACATCGGATGACAGTTCATTGAAGGAAGACAGGGAAGGCAAGAATAACACCCGTACCA
AAACCCACGATAAGAAGCCGCCAAAGAAGAAAAAATATCTCGACACCTATGGTACAAATCTTAATGAAAAGGCAAAAGAA
GGCAAAATTGACAGGGTTATCGGCCGTGACAAGGAAATTGACAGGGTAATTCAAATATTGAACCGGAGGAATAAAAACAA
CCCCGTTTTGATAGGTGAGCCTGGGGTAGGTAAGACTGCAATAGCTGAAGGATTGGCAGTTAGAATAGTTGAAAAGAAGG
TTCCGGCGAAGCTTTTCAATACAGAAGTGTATCAATTGGATTTAACCAGTATAGTTGCGGGCACACAGTTCAGAGGTCAG
TTTGAAAGCCGTATGAAGGGGATTATTGAAGAGGCAAAACATTTTGGTAACATAATAATTGTAATAGATGAACTGCACAA
TATCATGGGCGCCGGTGAAGCAGAAGGTGCCATGAATGCCGGAAATATTTTAAAACCCGCTCTGGCAAAAGGGGAAATAC
AGGTAATTGGTGCTACTACTCTGAATGAATACCGCAAGCATATAGAAAAGGATTCGGCTTTGGAAAGAAGATTCCAGCCG
GTAATGGTCGATGAACCTTCTGTTGAAGAAACCATAGAGATTCTTAAGGGGATTAAGGATTATTATGAAAGCTATCACAG
GGTAAAAATACCCGATGAGGTAATCCGGGCAGCAGTTATAATGTCTGAAAGATATATAACTGATCGTTTTCTGCCGGATA
AAGCCATAGATGTTATTGATGAAGCAGGCTCGAGGGCAAATATTAACAATGTCAGCCTCTTAGAGTATGACATGCTTAAG
GAAGAACTTAAGAAAGTACAGGAAGAAAAGGAAAATGCAATTTCAGCGGATTCCATAGAGGATTATCAGAAAGCCGCAGA
CCTTAAGGTTAGAGAGTGTAAACTTATAGAAAAGATAAATGAGATAGAGAAAAAGAACAAAGCATTGGAATTGACCATAG
ATGATGTGGCCCATGTAATTGAATCGTGGACTAAAATTCCGGTTCAAAGGCTTACCGAAATTGAGGCCAAGAAATTGCTG
AACCTTGAAGAAAGACTTCATAAGAGGATTATTGGACAGAAGCATGCCGTATCCAGTGTTGCAAAGGCAATAAGACGCAA
CAGGGCAGACTTTAAGAGAAAGAAAAGGCCAACTTCCTTTATTTTTGTAGGACCTACAGGAGTTGGAAAAACTGAATTGG
TCAAAGCCCTTGCCGTTGAGCTTTTTGAGAGTGAAGAAGCTCTGATAAGACTGGATATGTCCGAGTATATGGAGAAACAC
ACTGTTTCAAAAATGATTGGAGCACCTCCGGGGTATGTGGGTTATGACGATGGAGGTCAGCTGACTGAAAAAGTCAGACG
TAAGCCCTACTCGGTTATTCTTTTGGATGAAATTGAAAAAGCTCATCCAGACGTATTTAATATGCTCTTACAGATTCTTG
AGGATGGCCGGGTAACCGACAGCCACGGAAGAACAGTTAGCTTTGAAAATACAATAATAATTATGACTTCCAATGCCGGT
ACCAGCCTTAAAGCACATGGAATAGGCTTTGCCAATGACAATTATATTGCTCTTGAAAATAAAGTTAATGAGGTATTGAA
GGAAACATTCAGACCGGAGTTTTTAAACCGTATAGATGAAATAATTGTATTTAATGAACTCAGCAGAGATGAATTAAAAC
AAATAGTCAACTTAATGCTTAAGGAAGTTGTTGAAGAAGTTGAAAATAAAGGAATAAAGATTGAGATGACTGAAGCTGTA
CAGGATTATATACTGAAGCAGGGATACGACCAGAAATATGGTGCAAGGCCTCTTAGAAGAACAATACAGAAATACATCGA
AGATGAATTGGTTGACCGCTATCTTAGAGGAGAATACAAGGAAGGAAGCCATATTATAATTGATGCTGACAGCAACGGAT
TGAATTTTAGGCAAAAAAACGATTTGCAGCTTGAATCTGAATAA

Protein sequence :
MMMCSICKENIAVVFITKILDGKQTQEGLCFSCARKQGIQPIKQIIEQTGISEEEMEDLNKQMGSFFEELDINNLGSMVT
EPGSGSSNPFLNFFNKTLFKNNEASGSKDSESKDTSDDSSLKEDREGKNNTRTKTHDKKPPKKKKYLDTYGTNLNEKAKE
GKIDRVIGRDKEIDRVIQILNRRNKNNPVLIGEPGVGKTAIAEGLAVRIVEKKVPAKLFNTEVYQLDLTSIVAGTQFRGQ
FESRMKGIIEEAKHFGNIIIVIDELHNIMGAGEAEGAMNAGNILKPALAKGEIQVIGATTLNEYRKHIEKDSALERRFQP
VMVDEPSVEETIEILKGIKDYYESYHRVKIPDEVIRAAVIMSERYITDRFLPDKAIDVIDEAGSRANINNVSLLEYDMLK
EELKKVQEEKENAISADSIEDYQKAADLKVRECKLIEKINEIEKKNKALELTIDDVAHVIESWTKIPVQRLTEIEAKKLL
NLEERLHKRIIGQKHAVSSVAKAIRRNRADFKRKKRPTSFIFVGPTGVGKTELVKALAVELFESEEALIRLDMSEYMEKH
TVSKMIGAPPGYVGYDDGGQLTEKVRRKPYSVILLDEIEKAHPDVFNMLLQILEDGRVTDSHGRTVSFENTIIIMTSNAG
TSLKAHGIGFANDNYIALENKVNEVLKETFRPEFLNRIDEIIVFNELSRDELKQIVNLMLKEVVEEVENKGIKIEMTEAV
QDYILKQGYDQKYGARPLRRTIQKYIEDELVDRYLRGEYKEGSHIIIDADSNGLNFRQKNDLQLESE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 1e-154 53

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clocl_3127 YP_005047578.1 chaperone ATPase VFG0080 Protein 3e-148 55
Clocl_3127 YP_005047578.1 chaperone ATPase VFG0079 Protein 4e-159 54