Gene Information

Name : Clocl_2054 (Clocl_2054)
Accession : YP_005046575.1
Strain : Clostridium clariflavum DSM 19732
Genome accession: NC_016627
Putative virulence/resistance : Virulence
Product : response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2351575 - 2352285 bp
Length : 711 bp
Strand : +
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal

DNA sequence :
ATGGTAAAAAAGCTTATTTATGTCGTAGAAGATGAAAAACATATTCAGGAGCTAATAGCTTTTAATTTGATAGAAAACGG
TTATGATGTCAAATGCTTTGACAATGGTGAAACCATGTTTGATGAATGCCACACAACAAAGCCGGATTTGTTTATTTTAG
ATATAATGCTTCCCGGTATTGACGGGTTTGAAATTTGCCGAAAAATCAAAGAAAACCCTTTCTTAAAAAAAACACCTATA
ATTATGCTGACAGCTAAAAATGACGAATTTAACAAAGTTTTAGGTCTTGAATTAGGTGCTGAAGACTATATTACCAAACC
CTTCAGTGTAAGAGAACTTGTTGCAAGGGTTAAGGTGGTCTTCAGAAGGCAGGCAGAAAGCCGTGAAATTGTTCCCGAAG
TAATCAAGGTCGGTAAAATAACAATCGATGTGGCAAGACGCGAAGTATACAAAGATAATACCTTAATTGACCTGACCCTG
AAAGAATTCGAACTTTTAAAGTTACTGGTGCTCAATAAAGGAATGGTCATGTCCCGTGAATTGTTGCTGGAAAAAGTATG
GGGGTTTGACTATTATGGAGAAACAAGAACTGTTGATGTACACATCAGGTACCTAAGGCAAAAAATTGAAGATGATGACA
ATGCACCTGCTTATATAGAAACTGTCAGAGGCGTAGGATACCGATTCAGTGACAAAGGAGACAAGGAATAA

Protein sequence :
MVKKLIYVVEDEKHIQELIAFNLIENGYDVKCFDNGETMFDECHTTKPDLFILDIMLPGIDGFEICRKIKENPFLKKTPI
IMLTAKNDEFNKVLGLELGAEDYITKPFSVRELVARVKVVFRRQAESREIVPEVIKVGKITIDVARREVYKDNTLIDLTL
KEFELLKLLVLNKGMVMSRELLLEKVWGFDYYGETRTVDVHIRYLRQKIEDDDNAPAYIETVRGVGYRFSDKGDKE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 1e-29 41
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 4e-29 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clocl_2054 YP_005046575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_003923.1003749.p0 Protein 3e-43 49
Clocl_2054 YP_005046575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002952.2859905.p0 Protein 5e-43 48
Clocl_2054 YP_005046575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002758.1121668.p0 Protein 4e-43 48
Clocl_2054 YP_005046575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_009641.5332272.p0 Protein 4e-43 48
Clocl_2054 YP_005046575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_013450.8614421.p0 Protein 4e-43 48
Clocl_2054 YP_005046575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007793.3914279.p0 Protein 4e-43 48
Clocl_2054 YP_005046575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007622.3794472.p0 Protein 5e-43 48
Clocl_2054 YP_005046575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002745.1124361.p0 Protein 4e-43 48
Clocl_2054 YP_005046575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_009782.5559369.p0 Protein 4e-43 48
Clocl_2054 YP_005046575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002951.3237708.p0 Protein 4e-43 48
Clocl_2054 YP_005046575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_012469.1.7685629. Protein 5e-41 47
Clocl_2054 YP_005046575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain HE999704.1.gene2815. Protein 1e-43 47
Clocl_2054 YP_005046575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_012469.1.7686381. Protein 3e-42 46
Clocl_2054 YP_005046575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_003923.1003417.p0 Protein 1e-32 45
Clocl_2054 YP_005046575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_013450.8614146.p0 Protein 1e-32 45
Clocl_2054 YP_005046575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002951.3238224.p0 Protein 1e-32 45
Clocl_2054 YP_005046575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007793.3914065.p0 Protein 1e-32 45
Clocl_2054 YP_005046575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002758.1121390.p0 Protein 1e-32 45
Clocl_2054 YP_005046575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_010079.5776364.p0 Protein 1e-32 45
Clocl_2054 YP_005046575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002952.2859858.p0 Protein 1e-32 45
Clocl_2054 YP_005046575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007622.3794948.p0 Protein 1e-32 45
Clocl_2054 YP_005046575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AE016830.1.gene1681. Protein 3e-39 45
Clocl_2054 YP_005046575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_005054.2598277.p0 Protein 1e-34 43
Clocl_2054 YP_005046575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_014475.1.orf0.gen Protein 1e-34 43
Clocl_2054 YP_005046575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AE015929.1.gene1106. Protein 1e-29 42
Clocl_2054 YP_005046575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AF155139.2.orf0.gene Protein 1e-31 42
Clocl_2054 YP_005046575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_010400.5986590.p0 Protein 2e-27 41
Clocl_2054 YP_005046575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain EU250284.1.orf4.gene Protein 4e-27 41
Clocl_2054 YP_005046575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AM180355.1.gene1830. Protein 4e-28 41
Clocl_2054 YP_005046575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0111 Protein 6e-28 41
Clocl_2054 YP_005046575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0125 Protein 9e-26 41
Clocl_2054 YP_005046575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP001918.1.gene3444. Protein 2e-28 41
Clocl_2054 YP_005046575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP001138.1.gene2239. Protein 2e-27 41
Clocl_2054 YP_005046575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0596 Protein 2e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clocl_2054 YP_005046575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1563 Protein 8e-30 41
Clocl_2054 YP_005046575.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1702 Protein 2e-29 41