Gene Information

Name : Clocl_2050 (Clocl_2050)
Accession : YP_005046572.1
Strain : Clostridium clariflavum DSM 19732
Genome accession: NC_016627
Putative virulence/resistance : Resistance
Product : antimicrobial peptide ABC transporter ATPase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2348456 - 2349139 bp
Length : 684 bp
Strand : -
Note : PFAM: ABC transporter

DNA sequence : 
ATGGAAATCTTGCGTGTGGAAAATTTATCAAAAATATATGGTGAGGGTGAGACAGCAGTTAAAGCTTTGGATAATGTATC
TTTTTCTGTTAGAAAGGGTGAGTTCGTAGCTATTATTGGCCCTTCCGGTTCCGGTAAATCGACTCTTCTTCACCTCATTG
GCGGTGTGGACAGGCCAACCCATGGAAAGGTCTATATTGAAGGTAATGATATTTATAATTTGAATGAAACGCAGCTGGCC
ATATTCAGGCGGAGACAGATCGGTTTAATTTATCAGTTTTACAATCTAATTCCTGTCCTGACCGTGGAAGAAAATATAAA
ACTGCCTCTTTTATTGGATAAACAGAAGGTAGATGAAAGACATTTTAATGATATTGTTAAGTCATTAAACCTTGAGAATC
GATTAAATCATTTACCCAACCAGCTTTCGGGAGGTCAACAGCAGCGGGTCTCTATAGGGCGGGCCTTAATCAATAACCCG
GCTCTTATGTTGGCGGATGAGCCTACAGGCAATTTGGACAGTAAAAACAGCAGTGAGATAATCAATCTTTTGAAGATTTT
CAATATACAATTGAAGCAAACACTGATTGTCATTACCCATGATGAAAGAATAGCTCTTCAGGCTGATAGGGTACTAGCTA
TTGAAGATGGACGCATTGCCAAGGAAGAGGTGATTCGTCCATGA

Protein sequence : 
MEILRVENLSKIYGEGETAVKALDNVSFSVRKGEFVAIIGPSGSGKSTLLHLIGGVDRPTHGKVYIEGNDIYNLNETQLA
IFRRRQIGLIYQFYNLIPVLTVEENIKLPLLLDKQKVDERHFNDIVKSLNLENRLNHLPNQLSGGQQQRVSIGRALINNP
ALMLADEPTGNLDSKNSSEIINLLKIFNIQLKQTLIVITHDERIALQADRVLAIEDGRIAKEEVIRP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-33 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-34 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-34 41
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-34 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clocl_2050 YP_005046572.1 antimicrobial peptide ABC transporter ATPase CP001581.1.gene798.p Protein 6e-60 58
Clocl_2050 YP_005046572.1 antimicrobial peptide ABC transporter ATPase CP001581.1.gene598.p Protein 4e-56 55
Clocl_2050 YP_005046572.1 antimicrobial peptide ABC transporter ATPase NC_008702.1.4606598. Protein 2e-37 45
Clocl_2050 YP_005046572.1 antimicrobial peptide ABC transporter ATPase NC_012469.1.7686878. Protein 3e-38 43