|
Name : Clocl_0191 (Clocl_0191) Accession : YP_005044860.1 Strain : Clostridium clariflavum DSM 19732 Genome accession: NC_016627 Putative virulence/resistance : Virulence Product : helicase, type I site-specific restriction-modification system restriction subunit Function : - COG functional category : - COG ID : - EC number : - Position : 196282 - 199266 bp Length : 2985 bp Strand : + Note : PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Type III restriction enzyme, res subunit DNA sequence : TTGGCAAAAACTCCAGTGGAACTTAGTGAAAAGGGTTTTGAGGAATATGTTGAAGAACATCTATTAAATTCAGGATATAT TAAGGGTAATCCTGATGACTATAACAAAGAATTTGCCATTGATGCTAAACTTCTTATTGATTTTTTAGAAGATACACAGC CAAAGAAGATGGAGAGATTAAGAGAAATATATAAGGAACAGTATCAGTTTAAATTATTAAGCCGGTTAAATAGGGAATTA AACAACCGTGGCATGATTGATGTATTAAGACATGGAATTAAAGACTATGGTGTGTATTTAGACCTTGCCTATTTCCGGCC TGCCAGCAAATTAAATGATGAAATGATAAAACTCTATGAGAAAAATCGAATATCTGTAACAAGGCAGGTACACTACAGCA CTAAAAACGAAAACAGTATAGATATGCTTATATGTATCAATGGACTTCCTGTTGTTGTTTTAGAACTTAAAAATCCTTTC ACTGGTCAAACATATCAAGATGCAATCATGCAGTACAAGAAAGACAGAAGCCCTAATGAACTGTTGTTTCAGTTTAAGAA AAGAGCCATTGTATTCTTTGCAGTAGATACTCAAGAAGCATATATGACTACGAGACTTTCAGGAGATAAAACTTCTTTTC TTCCATTTAATAAAGGTTGTGATGGAGGAAAAGGAAATCCAGACAATCCTGATGGCTTAAAAACGGATTATCTTTGGGAA GAGATACTTCAAAAAGATAGCCTGATGGACATATTAAAAAGATTTGTATTTATAGAGACTCAAGAAAAGAAAGACATAGA CGGTAATACTTATACCTCGGAAACCGTCATATTCCCAAGATACCACCAATTAGATGTAGTAAGGAAACTGGAAGCCGATG CAAAAAAGAAAGGCGTAGGGACGAACTATCTTGTGCAGCATAGCGCAGGGTCAGGCAAAACCAACTCCATATCATGGCTT GCCCACAGACTTGCCAATCTTCATGATGATAATGATAACCCTGTATTTGATTCGGTTATTGTTATTACGGATAGAAGAGT TTTGGACAGGCAGTTGCAGGACAGCATTTACCAGTTGGAGCACAAATATGGAGTTGTTCAAAAAATAGATAAAGACTCCA ACCAATTGGCTGATGCCTTGAAGAGCGGAACAAGAATAATTATTTCCACTCTGCAAAAGTTCCCCTTTATTATCGAAAAG GTAGGAGAGTTGGAAAATCGTAAGTATGCTGTTATTATTGATGAGGCCCATTCCAGCAGTGCAGGAGAAAACATGGCTTC TTTAAGGGAAGTGCTGTCGGTAAGTACCCTTGAAGAAGCGGCAAAACTGGATGAAGAGTTAGAGGGCAAAGAATACGACC CTGAGGAGGAGATTTTAAAAACAATAAAGAAAAGGGGAAAACAGCCTAATATCAGTTTCTTTGCTTTTACGGCTACGCCT AAAGCAAAAACTCTTGAGATGTTCGGGACAATAGGACCTGACGGACTGCCCCATCCATTTCATTTATACTCTATGAGGCA GGCAATTGAAGAAGGCTTTATTTTAGATGTGCTTCAAAACTATGTTACATATGAAACATACTTCAAACTGGCAAAGAAAA TAGAGGATGACCCAACCTTTGATAGAGCAAAAGCGACTAAAGCAATAACCCGATATGTAAGCCTGCACCCACATAACATT GCACAAAAGACTGAAATCATGGTGGAACACTTCAGGAGCGTAACAAGGCATAAAATAGGCGGAAGGGCCAAGGCAATGGT TGTAACCAGTTCCAGGCTCCATGCAGTACGCTATAAGCATGCCTTTGATGAATATATCAAAAAGAAAGGCTACAGAGATA TGAAAACCCTGGTAGCCTTTTCGGGAACAGTAAAAGATGGCGGTGTAGATTACAAAGAAAGTGACATGAACGGATTTAAG GAATCAGAACTTCCAGAACGTTTTGCCACTGATGAGTACCAGGTGCTTTTGGTTGCAGAAAAGTACCAGACAGGATTTGA CCAACCCCTTTTACATACCATGTATGTGGATAAAAAGTTGTCAGGAGTCAAGGCGGTACAGACTTTATCAAGGCTCAATA GAACCTGCACAGGAAAAGATGATACCTTTATCCTTGACTTTGTAAATAAGGCAGAGGATATTCAGGAAGCCTTCAAGCCC TATTACCAGGCAACCATTGTGGAAGAAGTGACAGAGCCTAACCTGCTTTATGATATTGAAACTCAACTACATTCTTATGG TGTATATCTCAAAGAGGAATTGGATAAGTTTGCTTATATTTATTTTAAGCCCAAGGATAAAAAGACTTCCAAAGATAGGG CAATGTTGAATCACTTGATAGATATAACCGTAGAGAGGTTTAAGAAACTAGAGGAACAGCGAAAGCAAGATTTCAGTAGC CAAGCGACGAAATACATAAGGCTTTATTCATTCATTCTACAAATCACGCCTTTTGAGGATGTTGAATTGCATAAGTTGTA TGTATATTTAACATATCTGCTAAAAAAACTTCCAAAGGGAAAAGGCTCCACTGTTCACCTCGCTGATGAAATTGCTTTAG AGTATTATACTACCAGAAAGACATTTGAAGGGAGTATCTCATTAACTGCTGATGATGAAGTACCAGTTACACCTGTTAAA TTTGCAGGAACAGGGGTAAAAGAAGAACAGGAAGAATATCTGTCCAGCATTATTGAGCGTCTTAATAAGCGGTTTGGAAC GGACTTCACAAAAGCGGACCAATTATCGGTAGAGCAGATTAAAGAGGATTTTGCTGCTGATGAGGATTTGGTTCAAAAGG CTAAGACAAATACTATTGATGACTTTAGACTTGCTTTTGAAAAAGTATTTATTAATAAAGTAATTGACAGGATGGACCAG AACCAGGCATTCTTTACCCGTGTTTTAGACGATGAACAATTTAAGAATGCACTTATGGAGTATATGCTGGTTGAGACCTA TGAGAAGTTAAACAGCAGGGCTTAG Protein sequence : MAKTPVELSEKGFEEYVEEHLLNSGYIKGNPDDYNKEFAIDAKLLIDFLEDTQPKKMERLREIYKEQYQFKLLSRLNREL NNRGMIDVLRHGIKDYGVYLDLAYFRPASKLNDEMIKLYEKNRISVTRQVHYSTKNENSIDMLICINGLPVVVLELKNPF TGQTYQDAIMQYKKDRSPNELLFQFKKRAIVFFAVDTQEAYMTTRLSGDKTSFLPFNKGCDGGKGNPDNPDGLKTDYLWE EILQKDSLMDILKRFVFIETQEKKDIDGNTYTSETVIFPRYHQLDVVRKLEADAKKKGVGTNYLVQHSAGSGKTNSISWL AHRLANLHDDNDNPVFDSVIVITDRRVLDRQLQDSIYQLEHKYGVVQKIDKDSNQLADALKSGTRIIISTLQKFPFIIEK VGELENRKYAVIIDEAHSSSAGENMASLREVLSVSTLEEAAKLDEELEGKEYDPEEEILKTIKKRGKQPNISFFAFTATP KAKTLEMFGTIGPDGLPHPFHLYSMRQAIEEGFILDVLQNYVTYETYFKLAKKIEDDPTFDRAKATKAITRYVSLHPHNI AQKTEIMVEHFRSVTRHKIGGRAKAMVVTSSRLHAVRYKHAFDEYIKKKGYRDMKTLVAFSGTVKDGGVDYKESDMNGFK ESELPERFATDEYQVLLVAEKYQTGFDQPLLHTMYVDKKLSGVKAVQTLSRLNRTCTGKDDTFILDFVNKAEDIQEAFKP YYQATIVEEVTEPNLLYDIETQLHSYGVYLKEELDKFAYIYFKPKDKKTSKDRAMLNHLIDITVERFKKLEEQRKQDFSS QATKYIRLYSFILQITPFEDVELHKLYVYLTYLLKKLPKGKGSTVHLADEIALEYYTTRKTFEGSISLTADDEVPVTPVK FAGTGVKEEQEEYLSSIIERLNKRFGTDFTKADQLSVEQIKEDFAADEDLVQKAKTNTIDDFRLAFEKVFINKVIDRMDQ NQAFFTRVLDDEQFKNALMEYMLVETYEKLNSRA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SAS0025 | YP_042158.1 | type I restriction enzyme protein | Not tested | SCC476 | Protein | 0.0 | 45 |
| VC1765 | NP_231400.1 | type I restriction enzyme HsdR | Not tested | VPI-2 | Protein | 4e-135 | 42 |
| VC0395_A1363 | YP_001217306.1 | type I restriction enzyme HsdR | Not tested | VPI-2 | Protein | 4e-135 | 42 |
| VPI2_0013c | ACA01830.1 | type I restriction enzyme HsdR | Not tested | VPI-2 | Protein | 1e-135 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Clocl_0191 | YP_005044860.1 | helicase, type I site-specific restriction-modification system restriction subunit | VFG1098 | Protein | 2e-135 | 42 |
