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Name : Clocl_1698 (Clocl_1698) Accession : YP_005046236.1 Strain : Clostridium clariflavum DSM 19732 Genome accession: NC_016627 Putative virulence/resistance : Unknown Product : HsdR family type I site-specific deoxyribonuclease Function : - COG functional category : - COG ID : - EC number : - Position : 1937122 - 1940337 bp Length : 3216 bp Strand : + Note : PFAM: Domain of unknown function (DUF3387); Type I restriction enzyme R protein N terminus (HSDR_N); Type III restriction enzyme, res subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; manually curated DNA sequence : ATGCCTAAGCTTTGTGAATCTGAAATTGAAAAAATGGCAATAGAAGAACTGGTGAAATTGGGCTATGAATACTTTTCTGG CCCGGATATAGCACCGGATGCACCTTTTGCAGAGCGTAAAGGTTATGGGGATGTTCTGCTTAAGAAAAGGCTGATTGACG CGGTAATACAGCTTAATCCCGGACTTCCTTATGATGTGGTTATAGAGGCGGTAAATAAAGTTTCCCGTATCAGTTCATCA AATCTGATTGGCGACAATGAAACTTTCCATAAAATGCTGGTTGACGGTGTGCCTGTCGAATACCGCAAAAACGGAGATAT TGTTGGCGATTATGTAAAGCTTGTGGATTTCTCGGAAGATGGAGTTGACAACAACGAATTTCTTGTAGTCAACCAGTTTA CCGTTATTGAGAACAATAACAATAAGCGGCCTGATATTCTTCTATTTATCAACGGTATTCCTATGGTGCTGTTTGAGCTT AAAAATCCGGTTGATGAAAATGCCACAATTCGCAAAGCTTATGACCAGATCTGCACATACAAGGCAATTATACCAAGCCT TTTCACATATAACGAGATATGCGTTATTTCAGATGGGCTGGAAGCTAAGGCAGGTTCATTAACCGCTCCATTCTCACGTT TTTCCACATGGAAAACAAAAGACGGGCTGAATGAAGCCTCACGATTTGAAGATCAGCTTACCACCCTTATTCACGGGCTG TGCAACAAGAAAACCTTGCTCGACTATATACGCAATTTTATAACCTTTGAAAAGAGCAAAACTGAGGATAAAAAGACCAA AATAACAAAAGTGGAAACTGTCAAGAAAATTGCCGCCTATCATCAGTATTACGCTGTTAATAAAGCTGTTAAAAGTACGA TTGAAGCGGCAAGGGCGGATGGCAGCAAAAAAGCCGGTGTTATATGGCATACTCAAGGATCCGGCAAATCCCTTTCTATG GTTTTTTATGCTGGAAAACTGGTGCAAAACCTTAACAATCCAACTATAGTTGTTATTACCGACAGAAATGATTTGGACGA TCAACTCTTTGATACTTTTGCTGGAAACAGCGACCTTCTGCGCCAGCCGCCGAAGCAGGCGGAAAGCTGCGAGCATTTAA AAGAATTATTAAAGGTAGCATCCGGAGGCATAGTTTTTACCACTATTCAAAAATTCATACCTGATAATGACAGCTCGGTT TATGAGCTTTTGTCGGAAAGAGACAACATAGTAGTTATAGCCGATGAAGCGCACCGCACGCAGTACGGCTTTAACGCGAA ACTCAGAGAAATAAAGGACGAAAACAATCAGGTTGTAGGGCAGCGCATAGCTTATGGTTTTGCCAAATATATGCGCGATG CCTTGCCAAACGCTACTTTTATAGGCTTTACAGGTACACCTGTTGAAAAGCAGGATGCCAACACGCCGGCGGTATTTGGC AATTACATAGATATTTACGACATTGCACAAGCGGTTGAAGATAAGGTGACAGTTAAAATATATTATGAAAGCCGTCTGGC TAAAGTCAATCTCACCGAGGAAGGCAAAAAGCTGATTGAGGAGTTCGACAGGGAACTTGAAGAAGTAGATGAAAAAGACG AAGCAAAAGCCGCAAAAATGAAATGGGCAAAGCTTGAGGCTATTGTCGGCAATAAAGAACGACTTGCCACTCTCGCAAAA GACATTGTTACGCATTTTGAAGACCGGCAGAAAGTATTTCAGGGTAAAGCGATGATTGTTGCCATGAGCCGTAGAATCGC CGTTGATTTGTATAATGAAATCATAAAGCTTCGCCCTGAGTGGCATAGTGACGATTTGGACAAGGGTGCTATCAAAGTTG TTATGACATCTTCCAGTTCTGATGGTCCTGAAATGCAGAAACACCATACTACTAAAGAGCAGCGAAAAATGCTTGCACAG CGTATGAAAGATGAAAATGATCCACTGAAAATTGTCATCGTGCGCGATATGTGGCTGACTGGCTTTGACGTTCCATGCCT CAACACCATGTATATCGATAAGCCGATGAAGGACCACAACCTTATGCAGGCAATAGCGCGCGTAAACCGTGTTTTCAAGG ACAAGCCGGGCGGGCTGATTGTCGATTATATCGGGATTGCCCCAAACCTAAAAAAAGCTTTAAGTTTCTATGCAGAGAGC GGTGGCAAGGGAGTACCTGCTGAAACTCAGGCAAGGGCTGTAGAAATAATGCTTGAAAAGCTAGAAGTTGTCCGGCAGAT TTTACACGGATTTGATTATACGAGCTTTTTCAAAGCAGAAGTAAAGGACAAGCTTTCTATTATCCTTCGCGCTGAAGATT TTATTTTATCTACAGATGATAAAAAAGCGCGTTTTATTAAGGAAGTAACCCTCCTAAGCCAGGCTTATGCACTTGCCAAA CCTGATAAGGCAACGGTTACACATGCAGAGGAAATAGCGTTTTTCCAAGCAGTTAAGGCAAGACTCACTAAATTTGAAAC AAGCGGCGAAAGTGGCATAAATTACGATTCTGTTATAAAAAACATTGTTGATTCGGCTATTGTATCAGATGAAGTTGTAG ATATTTTTGATGCTGCTGGTATTGAAAAGCCGGAATTGTCCATTCTCTCAGATGAATTCCTTATGGAAATTAAAGGGATG AAACATAAGAATCTGGCTATTGAGCTACTAAAAAAGATTTTGTCCGATGAAATAAAAGTACGTTCAAAATATAACCTGAC AAAATCAAAATCACTTATGGAAATGCTCACTTTAGCACTAAAACGGTATCAGAACAACCTACTTACAACCGCTGAAATCA TAGAAGAGCTTATCCGCATTGCTAAGGAAATTAAAAACGCCGACAGGAGGGGCGAGGAACTCGGCTTGTCCGAGGACGAG CTTGCTTTTTATGATGCGCTTGAAACCAATGATAGTGCGGTTAAAGTCTTGGGTGATGAAACCTTGAGAACAATTGCCCG CGAACTTGCAGATAAAGTGCGTAAAAATGCCACAATTGACTGGACATTAAAAGAAAGTGTCCGCGCAAAACTGATGGTAT TGGTTCGCCGGACATTAAATAAATACGGTTATCCGCCTGACAAACAGCAGCGCGCCGTGGAAACGGTTATGAAACAGGCA GAAAACTTAGCGGATATATGGGTTTCTCAAGAAGTGACTTATGATACGAGATTTTTGTCAGATCTTCCAAAAGTAGCGGA AGAAGTGAGTAATTAG Protein sequence : MPKLCESEIEKMAIEELVKLGYEYFSGPDIAPDAPFAERKGYGDVLLKKRLIDAVIQLNPGLPYDVVIEAVNKVSRISSS NLIGDNETFHKMLVDGVPVEYRKNGDIVGDYVKLVDFSEDGVDNNEFLVVNQFTVIENNNNKRPDILLFINGIPMVLFEL KNPVDENATIRKAYDQICTYKAIIPSLFTYNEICVISDGLEAKAGSLTAPFSRFSTWKTKDGLNEASRFEDQLTTLIHGL CNKKTLLDYIRNFITFEKSKTEDKKTKITKVETVKKIAAYHQYYAVNKAVKSTIEAARADGSKKAGVIWHTQGSGKSLSM VFYAGKLVQNLNNPTIVVITDRNDLDDQLFDTFAGNSDLLRQPPKQAESCEHLKELLKVASGGIVFTTIQKFIPDNDSSV YELLSERDNIVVIADEAHRTQYGFNAKLREIKDENNQVVGQRIAYGFAKYMRDALPNATFIGFTGTPVEKQDANTPAVFG NYIDIYDIAQAVEDKVTVKIYYESRLAKVNLTEEGKKLIEEFDRELEEVDEKDEAKAAKMKWAKLEAIVGNKERLATLAK DIVTHFEDRQKVFQGKAMIVAMSRRIAVDLYNEIIKLRPEWHSDDLDKGAIKVVMTSSSSDGPEMQKHHTTKEQRKMLAQ RMKDENDPLKIVIVRDMWLTGFDVPCLNTMYIDKPMKDHNLMQAIARVNRVFKDKPGGLIVDYIGIAPNLKKALSFYAES GGKGVPAETQARAVEIMLEKLEVVRQILHGFDYTSFFKAEVKDKLSIILRAEDFILSTDDKKARFIKEVTLLSQAYALAK PDKATVTHAEEIAFFQAVKARLTKFETSGESGINYDSVIKNIVDSAIVSDEVVDIFDAAGIEKPELSILSDEFLMEIKGM KHKNLAIELLKKILSDEIKVRSKYNLTKSKSLMEMLTLALKRYQNNLLTTAEIIEELIRIAKEIKNADRRGEELGLSEDE LAFYDALETNDSAVKVLGDETLRTIARELADKVRKNATIDWTLKESVRAKLMVLVRRTLNKYGYPPDKQQRAVETVMKQA ENLADIWVSQEVTYDTRFLSDLPKVAEEVSN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 50 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 50 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 50 |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 48 |
