Gene Information

Name : Clocl_1546 (Clocl_1546)
Accession : YP_005046107.1
Strain : Clostridium clariflavum DSM 19732
Genome accession: NC_016627
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1780169 - 1780522 bp
Length : 354 bp
Strand : -
Note : PFAM: IS66 Orf2 like protein

DNA sequence : 
ATGATAAGATGGAATGAAAAACCAGTGTATCTTTGCGGAAGATTAACGGATATGAGGAAATCTATCAACGGATTAATAAC
ACTGGTACAAGAAAGTTTCTCACTTGATCCGTTTATGAATGCACTGTTTGTGTTCTGTAACAGAAATAGAAACAGGATAA
AAATCCTTGAATGGGATGGAGATGGGTTTTGGCTGTACTTTAAGAGGCTAGAACGAGGGCGATTTCGCTGGCCAACAGAA
GAAGATTCAACCACAATGCTTCTTGATGTAAACGAATTAGCTTGTCTTATTGATAGTGCCAGATTAGAGAAAAAGCTCAG
GAGAAAGGAAGTTTTAGAGCGTCAAATTTCGTAA

Protein sequence : 
MIRWNEKPVYLCGRLTDMRKSINGLITLVQESFSLDPFMNALFVFCNRNRNRIKILEWDGDGFWLYFKRLERGRFRWPTE
EDSTTMLLDVNELACLIDSARLEKKLRRKEVLERQIS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAF71493.1 unknown Not tested Hrp PAI Protein 5e-13 47
Z1599 NP_287103.1 hypothetical protein Not tested TAI Protein 5e-09 43
Z1160 NP_286695.1 hypothetical protein Not tested TAI Protein 5e-09 43
ECO103_3567 YP_003223430.1 hypothetical protein Not tested LEE Protein 8e-08 42
Z4338 NP_289563.1 hypothetical protein Not tested OI-122 Protein 8e-08 42
l0014 CAD33776.1 L0014 protein Not tested PAI I 536 Protein 2e-08 41
aec52 AAW51735.1 Aec52 Not tested AGI-3 Protein 5e-11 41
unnamed ADD91739.1 hypothetical protein Not tested PAI-I AL862 Protein 5e-11 41
Z1132 NP_286667.1 hypothetical protein Not tested TAI Protein 3e-09 41
Z1571 NP_287075.1 hypothetical protein Not tested TAI Protein 3e-09 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Clocl_1546 YP_005046107.1 transposase VFG1517 Protein 7e-09 41