Gene Information

Name : AZOBR_10225 (AZOBR_10225)
Accession : YP_005029922.1
Strain : Azospirillum brasilense Sp245
Genome accession: NC_016617
Putative virulence/resistance : Virulence
Product : putative ABC transporter (ATP-binding protein)
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 208739 - 209548 bp
Length : 810 bp
Strand : +
Note : Evidence 3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pt : putative transporter

DNA sequence :
ATGCAGTATCTCTGGCGCACCCCCGGCAGCCGCACCGCCCCCGAAGAGGCCTCGCCCATCGGGCCGCCGCCTCTGGATAT
CCGCGGCCTGACCGTCGCCTACCACCGCCGGCCGGTGCTGTGGAACGTCGACTACGCCGCCCCGCCGGGCGGGCTGATCG
CCGTGGTCGGGCCGAACGGCGCGGGCAAGTCGACCCTCATCAAGGCGTGTCTCGGGCTGGTGCCGCGGGTGTCGGGAGCG
GTCGAGGTGTTCGGGCGCCCGATCGCCAGGCAGCGCCGCCTGATCGGCTATGTGCCGCAGCGCGAAAGCGTGGACTGGGA
CTTCCCCGTCTCGGCGCTCGACGTGGTGGCGATGGGCCGTTACGGGAAGATCGGCTGGTTCCGCCCGGTCACCCGCTCCC
ACAGGGAGGCGGCGCTGCACGCGCTGGAGCGGGTGGGCATGGCCGACTTCGCCAAGCGCCAGATCGGCCAGCTCTCCGGC
GGGCAGCAGCAGCGCGTCTTCCTGGCCCGCGCGCTGGCCCAGGAGGCGCAGCTCTACTTCATGGACGAGCCCTTCGCCGG
GGTGGACGCGGCGACGGAGCGCGCGGTGCTCCAGGTGCTGCGCGACCTCGACGCCGCCGGGCGGACGGTGATCTGCGTCC
ACCACGACCTGCAGACGGTCAGCGACTATTTCGACCACGCCCTGCTGCTCAACACCCGCGTGGTCGCCCAAGGGCCGGTC
GCACGGGTGATGACGCCCGACCTGCTGTCCCGCACCTACGGTGGACGGCCCATGCCGACGCCCGCGGCATTGGGAGCGGA
AGCGTCATGA

Protein sequence :
MQYLWRTPGSRTAPEEASPIGPPPLDIRGLTVAYHRRPVLWNVDYAAPPGGLIAVVGPNGAGKSTLIKACLGLVPRVSGA
VEVFGRPIARQRRLIGYVPQRESVDWDFPVSALDVVAMGRYGKIGWFRPVTRSHREAALHALERVGMADFAKRQIGQLSG
GQQQRVFLARALAQEAQLYFMDEPFAGVDAATERAVLQVLRDLDAAGRTVICVHHDLQTVSDYFDHALLLNTRVVAQGPV
ARVMTPDLLSRTYGGRPMPTPAALGAEAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 8e-46 41
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 1e-45 41
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 5e-47 41
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 4e-47 41
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 5e-46 41
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 5e-46 41
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 8e-47 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
AZOBR_10225 YP_005029922.1 putative ABC transporter (ATP-binding protein) BAC0400 Protein 1e-67 57
AZOBR_10225 YP_005029922.1 putative ABC transporter (ATP-binding protein) BAC0440 Protein 2e-47 43
AZOBR_10225 YP_005029922.1 putative ABC transporter (ATP-binding protein) BAC0350 Protein 2e-47 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
AZOBR_10225 YP_005029922.1 putative ABC transporter (ATP-binding protein) VFG0526 Protein 2e-47 41