Gene Information

Name : Dsui_2863 (Dsui_2863)
Accession : YP_005029040.1
Strain : Dechlorosoma suillum PS
Genome accession: NC_016616
Putative virulence/resistance : Virulence
Product : lysyl-tRNA synthetase (class II)
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3053972 - 3055474 bp
Length : 1503 bp
Strand : +
Note : PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial

DNA sequence :
ATGACCGAACAGACCGCACAACCCCAGGACGAGAATCAGCTCATCGCCGAGCGCCGGGCCAAGCTGGCCAAGTGGCGCGA
GAGCGGCAAGGCCTACCCCAACGACTTCCGCCGCGAGAACACCGCCGGCCGCCTCGACGAGCTGTACAGCGAGAAAACCG
CCGAGGAACTGGAAGCCGCCCCCATCAGCGTCAAGGTTGCCGGCCGCATCATGCTGCGCCGCCTCATGGGCAAGGCCAGC
TTCGCCACCATCCAGGACGTTTCCGGCCGCATCCAGCTTTACGTCAAGGTGGACCTGGTGGGCGCCGAAGCCTATGACGA
CTTCAAGCACTGGGACATCGGCGACATCGTCGGTGCCGAAGGCACCCTGTTCAAGACCCGCACCGGCGAACTGACCATCC
AGGTCTCCGAGATCCGCCTGCTGTCCAAGGCCCTGCGCCCCCTGCCGGAGAAGTTCCACGGTCTGACCGACATGGAACAG
CGCCACCGCCAGCGCTATCTCGACCTGATCATGAACGAGTCCTCCCGGTTCACCTTCGTGGCCCGCAGCCGGATGATCCA
GTCCATCCGCAACTACATGATCAGTCACCACTTCCTGGAAGTGGAAACGCCCATGATGCACCCCATCCCCGGCGGTGCCT
CGGCCAAGCCCTTCATCACCCACCACAACGCCCTGGACATGGAACTGTTCCTGCGCATCGCGCCGGAGCTGTACCTGAAG
CGCCTGGTGGTGGGCGGCTTCGAGAAGGTCTTTGAAGTTAATCGCAACTTCCGCAACGAAGGCCTCTCCACCCGCCACAA
CCCCGAATTCACCATGATGGAGTTCTACGAGGCCTATGCCGACTACAAGCTCCTCATGGACTTCACCGAAGGCCTGCTGC
GCCACGCCGCCCGCGACGCCCTGGGCACCGAGGTGTTCCAGTACCAGGGCCGGGAGCTGGACCTGTCCAAGCCCTTCGCC
CGCCTGACCATGGTCCAGGCCGTGCGTGCCCAGTGCCCCGGCTACTCCGAAGCCGAACTGAATGACGCCGAGTGGCTGAA
GAAGAAGCTGGGCGAAATGAAGGTCGCGGTGAAGCCCGGCATGGGCCTGGGCGCCCTGCAGCTGCTGATGTTCGAGGAAG
TGGCCGAAGCCAACCTGTGGGACCCCACCTTCATCATCGACTACCCGGTGGAAGTCTCCCCCCTGGCCCGGGCCTCCGAC
AGCAATCCGGAAATCACCGAGCGCTTCGAGCTGTTCATCGTCGGCCGGGAAATCGCCAACGGCTTCTCCGAGCTGAACGA
TCCGGAGGACCAGGCCGCCCGCTTCCTGGAGCAGGCCAAGGCCAAGGATGCCGGCGACGAGGAAGCCATGTTCTACGACG
CCGACTACATCAAGGCCCTGGAATTCGGCCTGCCCCCCACCGGCGGCTGCGGCATCGGCATCGACCGTCTGGTCATGCTG
CTCACCGACACCGCCAACATCCGGGACGTCATCCTCTTCCCCCAGATGCGCAAGGAAGACTGA

Protein sequence :
MTEQTAQPQDENQLIAERRAKLAKWRESGKAYPNDFRRENTAGRLDELYSEKTAEELEAAPISVKVAGRIMLRRLMGKAS
FATIQDVSGRIQLYVKVDLVGAEAYDDFKHWDIGDIVGAEGTLFKTRTGELTIQVSEIRLLSKALRPLPEKFHGLTDMEQ
RHRQRYLDLIMNESSRFTFVARSRMIQSIRNYMISHHFLEVETPMMHPIPGGASAKPFITHHNALDMELFLRIAPELYLK
RLVVGGFEKVFEVNRNFRNEGLSTRHNPEFTMMEFYEAYADYKLLMDFTEGLLRHAARDALGTEVFQYQGRELDLSKPFA
RLTMVQAVRAQCPGYSEAELNDAEWLKKKLGEMKVAVKPGMGLGALQLLMFEEVAEANLWDPTFIIDYPVEVSPLARASD
SNPEITERFELFIVGREIANGFSELNDPEDQAARFLEQAKAKDAGDEEAMFYDADYIKALEFGLPPTGGCGIGIDRLVML
LTDTANIRDVILFPQMRKED

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD66193.1 putative lysil-tRNA synthetase LysU Not tested PAI III 536 Protein 5e-134 56

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dsui_2863 YP_005029040.1 lysyl-tRNA synthetase (class II) VFG1668 Protein 3e-134 56