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Name : Dsui_2572 (Dsui_2572) Accession : YP_005028764.1 Strain : Dechlorosoma suillum PS Genome accession: NC_016616 Putative virulence/resistance : Unknown Product : conjugative coupling factor TraD, TOL family Function : - COG functional category : - COG ID : - EC number : - Position : 2721455 - 2723548 bp Length : 2094 bp Strand : - Note : PFAM: Type IV secretion-system coupling protein DNA-binding domain; TIGRFAM: conjugative coupling factor TraD, TOL family; conjugative coupling factor TraD, SXT/TOL subfamily DNA sequence : ATGTCTTATCCATTTGAAAATCTATTCCGCAAGCCTTACGAGTTGATACCGGCTGCTACAAGCCTAGCAGCCGTCCCGAC CGCACTTTGCTTCCGCGATCTGCTACAGCTGTCTCCTGCAGCTGCAACAGCCTTTGCCCTAGGGTGCCTGGGGCATTCCG CCTGGCGATTCAACCAGGGCCGACAGGTTCTCCGCTTTCATCGCAACCTGAAGCGCTTGCCCAGCTATGTCCTTCGATCA GAGGACATCCCCTGGTCTGACCGGGAGCAGTTCCTGGGCCAGGGGTTTCGCTGGGACCAGCGACATACCCAGCGCCTGTT CACGGCACGGCAGCCGGCGTATGCCCATCTACGGGCACGCAACCGGCTTTATGACCGGGCCCGGGATTTCGAGCGGAAGC ACCCCGGGCACTGGCTGGCCAAGCGCTTGAGAGAAGAGTCCTGGTGGAACCCCGTTCCTCCCCTCCCACCCATCGGGGGC GACCCGGCCATTCACGGTATCGAGCTCGATGAGCTTGAGCAGTGGGTAGATCTGGGCGAACGGGTTGGCCATACCTTGGT GCTGGGCACTACTCGTGTCGGAAAAACCCGGCTCCTCGAGCTCCTGGTGACCCAGGACATCCGCCGCGGCGATGTGGTGA TCTGCTTTGACCCCAAGGGGGATGAAGGGCTATTGCGGCGAATGTACGCAGAAGCCAAGCGGGCCGGGCGAGAAAGCGAA TTCTACTTCTTCCACCTGGGCTACCCGGACAAGTCCGCCCGCTACAGCCCGATCGGGACCTACGCCCAAATCACGGAAGT GGCCACCCGGGTGGCCAACCAACTCCCAGGGGAAGGGCAATCGGCTGCCTTCAAGGAATTCGTGTGGCGATACGTCAACG TGATCGCCAAAACCATGGAGGCCCTGGGCATCAAGCCCACCTACGAGCAGCTGTACCGGCACGCTACCAACATCGATCTC CTGGCCCAGCAGTATTTCGAGCTCTGGCTTGACCGGGATCACCCAGGCTGGCGTGATCAACTGGAACTGCGCGGCACCAC TAAGGAAACTGCAGAGCAGGCCCGCAAGACCGGTCGCAGCCTCCAGGCCCTCAACATGCTGGGGCTTTTCCGGGAGAGAG GCTGGCACGATCCCATTGCAGATGCCCTGGGCTCGGTGCTGACGAATGATCGCAGCTACTTCGAGAAGCTGGTTTCCTCC CTCTACCCGCTGCTGGAAAAGCTCACCACTGGGCGTATCAACGAACTGCTGTCTCCCGACATGTCCAATCCGGACGATCT GCGCCCCGTATTCGACTGGGACAAGATCATCAACCAGGGCGGCATCGTCTATGTAGGGTTGGATTCCCTGTCCAACTTCG AGGTAGCCAGTGCGGTGGGGAACGCCATGTTTGCGGATCTCACCTCGACAGCCGGCCGGCTATACAAATTCGGCGCCGGC TATGGCCAGTCAGGGGCAATCAAGAAACGCAAGGTCTCAATCCATGGCGACGAGTTCAACGAGCTCATCGGTGATGAGTT TGTCCCGATGCTCAACAAGGCCGGCGGCGCCGGCTACCAGGTAACGGTCTATACCCAGACCTGGAGCGACGTGGAGGCCA AGATCGGATCTGCAGCGAAGGCTGGCCAGATCGGTGGCAACCTGAATACGCTAATCATGATGCGTGTAAAAAATACCGAG ACGGCCGAGATCCTGACCAACCAGCTGCCAGAGGTCACCGTCCAGGAGAGGATGCTGGTCTCGGGCACAACGGATAGCAG CGATGAGCATGACCTGGTGGGATTTACCGGCAAGGCAGAAGACCGCTTCAGCCTACGAAACGTCCCGATGATCCAGCCGG CCGACCTGGTGCAGCTGCCCAAGGGCCAGGCCTTCTGCCTGGTCGAAGGGGGGCAGCTGATCAAGGTCCGCTTGCCCCTG GCCAGCGATGAAGACGACGACTGCATGCCGCCGGATCTTGAGGACGTAGCAATCGACATGGGACGGAAGTACAACCGATA CATCGATGCCGAGGCACAGGGCCTCGTATCTGGCATCCGGCCGTGGGAACAGGTCACGACAGCCGGCCGGGGGAGTAGCT ATGGCATCCAGTAA Protein sequence : MSYPFENLFRKPYELIPAATSLAAVPTALCFRDLLQLSPAAATAFALGCLGHSAWRFNQGRQVLRFHRNLKRLPSYVLRS EDIPWSDREQFLGQGFRWDQRHTQRLFTARQPAYAHLRARNRLYDRARDFERKHPGHWLAKRLREESWWNPVPPLPPIGG DPAIHGIELDELEQWVDLGERVGHTLVLGTTRVGKTRLLELLVTQDIRRGDVVICFDPKGDEGLLRRMYAEAKRAGRESE FYFFHLGYPDKSARYSPIGTYAQITEVATRVANQLPGEGQSAAFKEFVWRYVNVIAKTMEALGIKPTYEQLYRHATNIDL LAQQYFELWLDRDHPGWRDQLELRGTTKETAEQARKTGRSLQALNMLGLFRERGWHDPIADALGSVLTNDRSYFEKLVSS LYPLLEKLTTGRINELLSPDMSNPDDLRPVFDWDKIINQGGIVYVGLDSLSNFEVASAVGNAMFADLTSTAGRLYKFGAG YGQSGAIKKRKVSIHGDEFNELIGDEFVPMLNKAGGAGYQVTVYTQTWSDVEAKIGSAAKAGQIGGNLNTLIMMRVKNTE TAEILTNQLPEVTVQERMLVSGTTDSSDEHDLVGFTGKAEDRFSLRNVPMIQPADLVQLPKGQAFCLVEGGQLIKVRLPL ASDEDDDCMPPDLEDVAIDMGRKYNRYIDAEAQGLVSGIRPWEQVTTAGRGSSYGIQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| traD | AAW83057.1 | TraD | Not tested | GGI | Protein | 5e-175 | 56 |
| PMI2588 | YP_002152307.1 | plasmid transfer protein | Not tested | Not named | Protein | 2e-132 | 52 |
| YpsIP31758_3718 | YP_001402672.1 | hypothetical protein | Not tested | YAPI | Protein | 4e-139 | 50 |
| STY4562 | NP_458648.1 | hypothetical protein | Not tested | SPI-7 | Protein | 1e-139 | 50 |
| t4260 | NP_807858.1 | hypothetical protein | Not tested | SPI-7 | Protein | 1e-139 | 50 |
| api27 | CAF28501.1 | hypothetical protein | Not tested | YAPI | Protein | 1e-138 | 50 |
| YE3493 | YP_001007651.1 | TraG-family protein | Not tested | YAPI | Protein | 2e-137 | 50 |
| Pmu_03190 | YP_005176218.1 | conjugal transfer protein TraD | Not tested | ICEPmu1 | Protein | 4e-135 | 50 |
| ORF SG68 | AAN62290.1 | conserved hypothetical protein | Not tested | PAGI-3(SG) | Protein | 2e-139 | 49 |
| unnamed | ABR13375.1 | hypothetical protein | Not tested | PAGI-5 | Protein | 1e-138 | 48 |
| EXA47 | ABD94656.1 | TraG/TraD family protein | Not tested | ExoU island A | Protein | 1e-138 | 48 |
| RL047 | AAP84173.1 | conserved hypothetical protein | Not tested | PAPI-1 | Protein | 3e-139 | 48 |
| traG | CAI36113.1 | putative TraG family conjugative protein | Not tested | PPHGI-1 | Protein | 2e-135 | 47 |
| ORF C65 | AAN62159.1 | conserved hypothetical protein | Not tested | PAGI-2(C) | Protein | 6e-139 | 47 |
