Gene Information

Name : Dsui_1823 (Dsui_1823)
Accession : YP_005028040.1
Strain : Dechlorosoma suillum PS
Genome accession: NC_016616
Putative virulence/resistance : Resistance
Product : beta-lactamase class D
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1920725 - 1921618 bp
Length : 894 bp
Strand : +
Note : PFAM: Penicillin binding protein transpeptidase domain

DNA sequence :
ATGATGAAATTTTGCATGCTTCGGTCCCTGGTTTTCTGTCTGCTCCTGCTGGGGGGCGGCGTTGCCGCCCGGGCGGAAAC
CGCGGACGAGCGGCACGAGTGGGGCGCCTTCTTCGCCGCCGCCGAGGCCCGCGGCACCATGGTGGTGGCGGACCGGCGCG
GCGGCGGCCACCGCCTGTGGCGCTACGATGCGGAGCGGGCGGCGCGGCGCTATGTGCCCGCCTCCACCTTCAAGATCGCC
CATGCCCTGATGGCCCTGGAGAGCGGCGTGCTGCGGGACGAATTCCAGGTCCTGCCCTGGGACGGGGTGCAGCGCGCCAT
CCCGGCCTGGAACCGGGACCAGGACCTGCGTTCCTCCATGCGCGCATCCGTGGTCTGGGTGTACCAGGGCTTTGCCCGGC
AGATCGGCGAGGCCCGGGCCCGGCGCCTGCTGCAGGCCATGGACTACGGCAACGCCGAGCCGTCCGGCGGCGAGGACGGC
TACTGGCTGGACGGCAAGTTGCGCATTTCCGCCGAGGAGCAGGTGGCCTTTCTCGAGCGCCTCTACCGCAATCAGTTGCC
GCTGGCCCTGGCCCACCAGCGGCTGGTGAAGGACGTGATGATCGTGGAGGCCGGCCGCGACTGGATCCTGCGGGCCAAGA
CCGGCTGGGACGGCCGCATCGGCTGGTGGGTGGGCTGGGTGGAGTGGCCCCAGGGACCGGTGTTCTTCGCCCTCAACCTG
GATACGCCGGGGCGGATGGCGGATCTGCCGAAGCGGGAAGGGGTGGCCCGGGCCATCCTGGCGGCCATCGGCGCCCTGCC
GGCGGCACCGGGGGCGAGCGGGGCGAATGCCTCGGGTGCGATGACCGGGGCCGTGTCTCCCGCCCCGCCCGGCACCGCCC
TGCCAGGCAAATAG

Protein sequence :
MMKFCMLRSLVFCLLLLGGGVAARAETADERHEWGAFFAAAEARGTMVVADRRGGGHRLWRYDAERAARRYVPASTFKIA
HALMALESGVLRDEFQVLPWDGVQRAIPAWNRDQDLRSSMRASVVWVYQGFARQIGEARARRLLQAMDYGNAEPSGGEDG
YWLDGKLRISAEEQVAFLERLYRNQLPLALAHQRLVKDVMIVEAGRDWILRAKTGWDGRIGWWVGWVEWPQGPVFFALNL
DTPGRMADLPKREGVARAILAAIGALPAAPGASGANASGAMTGAVSPAPPGTALPGK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ACICU_00226 YP_001844885.1 Beta-lactamase class D Not tested AbaR20 Protein 3e-71 61
blaOXA-2 YP_005176242.1 beta-lactamase OXA-2 protein Not tested ICEPmu1 Protein 4e-72 61
blaOXA-129 AET25386.1 OXA-129 beta-lactamase Not tested PAGI-2(C) Protein 3e-40 41
bla OXA-129 AFG30109.1 OXA-129 beta-lactamase Not tested PAGI-2 Protein 3e-40 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dsui_1823 YP_005028040.1 beta-lactamase class D AY139598.1.gene3.p01 Protein 6e-71 63
Dsui_1823 YP_005028040.1 beta-lactamase class D AF317511.1.gene5.p01 Protein 2e-71 63
Dsui_1823 YP_005028040.1 beta-lactamase class D Y10693.2.gene1.p2 Protein 5e-72 63
Dsui_1823 YP_005028040.1 beta-lactamase class D L07945.1.gene1.p01 Protein 2e-72 63
Dsui_1823 YP_005028040.1 beta-lactamase class D DQ522237.1.gene5.p01 Protein 5e-72 63
Dsui_1823 YP_005028040.1 beta-lactamase class D AF371964.1.gene1.p1 Protein 3e-70 62
Dsui_1823 YP_005028040.1 beta-lactamase class D JF800667.1.gene2.p01 Protein 2e-70 62
Dsui_1823 YP_005028040.1 beta-lactamase class D AF300985.1.gene1.p01 Protein 6e-71 61
Dsui_1823 YP_005028040.1 beta-lactamase class D AF350424.1.gene1.p01 Protein 3e-70 61
Dsui_1823 YP_005028040.1 beta-lactamase class D AF024602.1.gene3.p01 Protein 1e-71 61
Dsui_1823 YP_005028040.1 beta-lactamase class D EF552405.1.gene1.p01 Protein 4e-72 61
Dsui_1823 YP_005028040.1 beta-lactamase class D JF795487.1.gene1.p01 Protein 3e-71 61
Dsui_1823 YP_005028040.1 beta-lactamase class D GQ202693.1.gene2.p01 Protein 2e-72 61
Dsui_1823 YP_005028040.1 beta-lactamase class D AY289608.1.gene2.p01 Protein 2e-73 61
Dsui_1823 YP_005028040.1 beta-lactamase class D AF315351.1.gene2.p01 Protein 4e-72 61
Dsui_1823 YP_005028040.1 beta-lactamase class D M95287.gene.p01 Protein 2e-72 61
Dsui_1823 YP_005028040.1 beta-lactamase class D U63835.1.gene1.p01 Protein 4e-72 61
Dsui_1823 YP_005028040.1 beta-lactamase class D HM015773.1.gene6.p01 Protein 7e-46 46
Dsui_1823 YP_005028040.1 beta-lactamase class D AY500137.1.gene1.p01 Protein 1e-46 46
Dsui_1823 YP_005028040.1 beta-lactamase class D JN205800.1.gene6.p01 Protein 7e-46 46
Dsui_1823 YP_005028040.1 beta-lactamase class D HQ700343.1.gene1.p01 Protein 1e-47 46
Dsui_1823 YP_005028040.1 beta-lactamase class D AY423074.1.gene1.p01 Protein 1e-37 44
Dsui_1823 YP_005028040.1 beta-lactamase class D AY343493.1.gene1.p01 Protein 5e-41 44
Dsui_1823 YP_005028040.1 beta-lactamase class D AY306130.1.gene1.p01 Protein 5e-35 42
Dsui_1823 YP_005028040.1 beta-lactamase class D X58272.1.gene1.p01 Protein 6e-41 41
Dsui_1823 YP_005028040.1 beta-lactamase class D AM932669.1.gene2.p01 Protein 2e-40 41