Gene Information

Name : Dsui_1537 (Dsui_1537)
Accession : YP_005027767.1
Strain : Dechlorosoma suillum PS
Genome accession: NC_016616
Putative virulence/resistance : Virulence
Product : DNA repair protein radc
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1597826 - 1598503 bp
Length : 678 bp
Strand : -
Note : PFAM: Protein of unknown function (DUF2466); TIGRFAM: DNA repair protein radc

DNA sequence :
ATGGCAATCACCGACTGGCCCGAAGACGAACGCCCCCGGGAGCGGCTGCTGAAGCAGGGCGCCACCGCCCTCTCCGATGC
GGAACTGCTGGCCGTCTTCCTGCGGGTCGGGGTGCGGGGCCAGAGCGCGGTGGACATGGCGCGCAGCCTGCTGCAGCGTT
TCGGCAGCCTGACCCGGCTGTTTGCCGCCACGGCGGAGGAGATCGGCGCCGTGCCCGGCATGGGCAGCGCCAAGTACGCC
CAGATCCAGGCCGTCCTGGAAATGTCCCGGCGCGCCCTGCGGGAGGAAATGGAGCGGCCCCATGCCTTCAATTCCCCGGG
TGCGGTGCGCGACTACCTGCGGGCCCGGCTGGGCGGCGAGCCGCGGGAGGTGTTCCTGGCCCTGTGGCTGGACGCCCAGA
ACCGCCTCATCGCCGCCGAGGAACTGTTCCGCGGCACCCTGACCCAGACGGCGGTCTATCCCCGGGAAGTGGTGAAGACG
GCCCTGGCCCGCAATGCGGCGGCCGTCATCTTCGCCCACAACCACCCCTCCGGCGTCGCCGAGCCCTCCCGGGCCGACGA
ACAGCTCACCGCCGCCCTCAGGCAGAGCCTGGCCCTGGTGGAGGTGCGGGTGCTGGACCATTTCGTCGTCGCCGGCAACG
CCCAGCCCCTTTCTTTTTCCGAGCGGGGCTTGCTCTGA

Protein sequence :
MAITDWPEDERPRERLLKQGATALSDAELLAVFLRVGVRGQSAVDMARSLLQRFGSLTRLFAATAEEIGAVPGMGSAKYA
QIQAVLEMSRRALREEMERPHAFNSPGAVRDYLRARLGGEPREVFLALWLDAQNRLIAAEELFRGTLTQTAVYPREVVKT
ALARNAAAVIFAHNHPSGVAEPSRADEQLTAALRQSLALVEVRVLDHFVVAGNAQPLSFSERGLL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD66203.1 hypothetical protein Not tested PAI III 536 Protein 9e-23 48
ECO103_3589 YP_003223446.1 radC-like protein YeeS Not tested LEE Protein 1e-22 48
unnamed CAD42098.1 hypothetical protein Not tested PAI II 536 Protein 5e-23 47
yeeS AAZ04458.1 putative RadC-like protein Not tested PAI I APEC-O1 Protein 4e-23 47
yeeS YP_854323.1 radC-like protein YeeS Not tested PAI I APEC-O1 Protein 6e-23 47
c5152 NP_757000.1 radC-like protein yeeS Not tested PAI II CFT073 Protein 6e-23 47
unnamed AAL08475.1 unknown Not tested SRL Protein 5e-23 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Dsui_1537 YP_005027767.1 DNA repair protein radc VFG1678 Protein 5e-23 48
Dsui_1537 YP_005027767.1 DNA repair protein radc VFG1617 Protein 3e-23 47
Dsui_1537 YP_005027767.1 DNA repair protein radc VFG1066 Protein 2e-23 47