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Name : KOX_26315 (KOX_26315) Accession : YP_005021211.1 Strain : Klebsiella oxytoca KCTC 1686 Genome accession: NC_016612 Putative virulence/resistance : Virulence Product : outer membrane usher protein SfmD Function : - COG functional category : - COG ID : - EC number : - Position : 5686668 - 5689217 bp Length : 2550 bp Strand : - Note : COG3188 P pilus assembly protein, porin PapC DNA sequence : ATGAAAAATAATCATAATAAATGGCGGCTTAACCGGATAGCCGGCGCTCTGGCCGTTGCGCTGCTACCGCTGTGTGAAGA TGTCCTGGCGCGGGAGGTTTTTAACCCGGCCCTGTTGGAAATGGACGGCCCTCATACGGGCGTCAGGGATTTATCCGCTT ACGAGCAGGCTGGCGGACAGCTGCCGGGGACCTACCGGGTAGATATTTATCTTAATAACGTTTTTATGGACACCCGCGAT GTGGTTTTTCAGCAGAGCAAAGGACCAGGAATAACGGAATTACAGCCTTGCCTGACGGTAGACGATCTGGCCGAATGGGG CGTGCGCGTCTCCCAATTTCCAGAGCTGGGCCGCAGAACGCCCGGCTGCGCGGATATCAGCGTGATACCGCAGGCAAAAT CCGATTTTCGCTTCAGCCAGCAGCGCCTGCTATTGAGCTTCCCGCAGGCGGCGGTAGCCAGCGCCGCCCGCGGCTGGGTG GATCCGAAACAGTGGGATGAGGGGGTGCCGGCGATCCTGCTGAATTACTCCTTTAGCGGGGCAAATAACTGGTCACGTCA GAACGATGCGCCGGACAGCGATAACCAATACGTTAACCTGCGCCCCGGTATCAACGTCGGGCCGTGGCGTTTACGTAACT ACACGACCTGGTCGCGCAGCAGCAGCGGGGGAGAGTCCAGTAATAGTTGGGACACGGTTTATACCTATGCGCAGCGCAAC ATCAAATCGATACAGGGGGTGATGACGCTGGGCGATAGCAGCACGGACGCCGACGTTTTTGAGGGCGTTCCCTTCCGCGG GGCGATGCTGGCTTCCGATGACGATATGCTGCCGGAAAGCCTGCGCGGCTACGCGCCCGTCGTTCGCGGGATTGCGCGCA CTAATGCTCAGGTCATTATTCGCCAGAACGGCTATGAGATTTACCAGACCTACGTCGCGCCTGGCGCTTTTGAAATTACC GATATGTACCCGACCGGCGGCTCGGGTGATTTAGCCGTCACCATCAAAGAGGCGGACGGCAGCGAGCAGAACCTGATCGT ACCTTACGCTTCTCTCCCTGTCCTGCAGCGCGAAGGGCGTCTGAAATATAGCGTGACCTCCGGCGTGTATCGCGCCTATG ACAACAGCATTGACGAAACGCCCCTCACGCAGGCGACGGCAATTTACGGCTTGCCCTGGGGGTTAACCCTGTACGGCGGC GGCCAGTTTAGCAGTAAATATCAGTCGGTGGCGCTGGGAATGGGGAAAAACCTCGGTGAACTGGGCGCCGTATCGACCGA TATCATCCAGGCCTGGTCGACCCGACAGGATAAAGATAAAGAGAGCGGGCAGTCGGTACGTCTCCGTTACAGCAAAGATC TCCCGGGTCTGGGAACTAACGTAAGCCTGGCAGGCTATCGCTATGCGACCAGCGGTTACTGGGATATGCAGGAAGTGCTG GATACCTATCGGGATGACAACTACACGCCTTCTATTGAACGGCGGCGCAACCGCGGGGAGGTAACGATCAGCCAAAGCCT TGGCGAAGAAATGGGATCGCTGTCGCTGAGCTATATCCGCGAGGACTACTGGAATACCAGCCGCACCATGGAGTCAGTGG GCGTCGGATACAACAACAGCTGGCGCGGCATCAGCTATAGCATGAACTACAGCTATAACCGCAATACTACCGACCAGAAC ACCGGTAAGCGTAATGACGAAGATCACCTCTTTGCACTGAGCATCAGCGTGCCTTTGGGGGAATGGCTACCGAAGCCGGT TTATGCCAACTACTCCCTGAACAGCAGCAAAAATGGCTCCACCAGCAACAATCTGGGCCTCTCCGGCACCTTGCTGGAGC GTAATAACCTGAGCTGGAGCGTGCAGGAAGGCTACACCAGCCAGGGAAGAGGGGAGAGCGGCAGCGTCAATGCGGACTGG CGTGCAACCTATGCTGAACTTACCGGCGGCTACAGCCATGATAAATACAGCCATCGGCTGAACTACGCCCTGCGCGGCGG AGCGCTGGTACATGAAAACGGCCTGACGCTGGGCCAGCCTTTCGGCGAAACCGTCGCTCTCATCAAGGCGCCCGGCGCCG CCGGCGTCGGCGTGAATAGCCAGACAGGGGTCAGAACCGACTGGCGAGGCTATACCGTAGTGCCTTACGCCTCGCCGTAT CGTAAGAATATCCTGACGCTCGATACCACGACGATGCCGGACGATGTCGACCTTGAGTTGGCGACGCAGACGGTCGTACC AACCCGTGGGGCGGTGGTTCGCGCAAATTATGCCACCAGCGTGGGTAACCGGGTACTGATGACGGTACGCCAGGAGAACG GGCAACCCCTGCCTTTCGGAGCCATGGTCAGCGTCCCCGGGGCGGCATCCTCTGAGCAGGCGTTTATCGTTGGCGATGGC GGGCAGGTCTACCTGACCGGACTGGAATCTAACGGCGTACTCAACGTGAAGTGGGGCTCCGGGGCGCAAGAACGCTGCCA GATCCACTATGCGCTGCCGTCAGCAAAAGAACTTACCGGCATTATTGTGGCCCAGGCGCAATGCCGATAA Protein sequence : MKNNHNKWRLNRIAGALAVALLPLCEDVLAREVFNPALLEMDGPHTGVRDLSAYEQAGGQLPGTYRVDIYLNNVFMDTRD VVFQQSKGPGITELQPCLTVDDLAEWGVRVSQFPELGRRTPGCADISVIPQAKSDFRFSQQRLLLSFPQAAVASAARGWV DPKQWDEGVPAILLNYSFSGANNWSRQNDAPDSDNQYVNLRPGINVGPWRLRNYTTWSRSSSGGESSNSWDTVYTYAQRN IKSIQGVMTLGDSSTDADVFEGVPFRGAMLASDDDMLPESLRGYAPVVRGIARTNAQVIIRQNGYEIYQTYVAPGAFEIT DMYPTGGSGDLAVTIKEADGSEQNLIVPYASLPVLQREGRLKYSVTSGVYRAYDNSIDETPLTQATAIYGLPWGLTLYGG GQFSSKYQSVALGMGKNLGELGAVSTDIIQAWSTRQDKDKESGQSVRLRYSKDLPGLGTNVSLAGYRYATSGYWDMQEVL DTYRDDNYTPSIERRRNRGEVTISQSLGEEMGSLSLSYIREDYWNTSRTMESVGVGYNNSWRGISYSMNYSYNRNTTDQN TGKRNDEDHLFALSISVPLGEWLPKPVYANYSLNSSKNGSTSNNLGLSGTLLERNNLSWSVQEGYTSQGRGESGSVNADW RATYAELTGGYSHDKYSHRLNYALRGGALVHENGLTLGQPFGETVALIKAPGAAGVGVNSQTGVRTDWRGYTVVPYASPY RKNILTLDTTTMPDDVDLELATQTVVPTRGAVVRANYATSVGNRVLMTVRQENGQPLPFGAMVSVPGAASSEQAFIVGDG GQVYLTGLESNGVLNVKWGSGAQERCQIHYALPSAKELTGIIVAQAQCR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| sfaF | CAC16953.2 | SfaF protein | Virulence | PAI III 536 | Protein | 4e-147 | 43 |
| fim2D | AFH78429.1 | putative fimbrial usher protein | Virulence | KpGI-5 | Protein | 2e-147 | 41 |
| safC | NP_454907.1 | outer-membrane fimbrial usher protein | Not tested | SPI-6 | Protein | 4e-131 | 41 |
| afaC | AAD44022.2 | AfaC | Virulence | PAI-I AL862 | Protein | 2e-139 | 41 |
| afaC | ADD91743.1 | putative AfaC-VIII usher protein | Not tested | PAI-I AL862 | Protein | 2e-141 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| KOX_26315 | YP_005021211.1 | outer membrane usher protein SfmD | VFG0454 | Protein | 3e-158 | 43 |
| KOX_26315 | YP_005021211.1 | outer membrane usher protein SfmD | VFG1645 | Protein | 2e-147 | 43 |
| KOX_26315 | YP_005021211.1 | outer membrane usher protein SfmD | VFG0876 | Protein | 1e-151 | 43 |
| KOX_26315 | YP_005021211.1 | outer membrane usher protein SfmD | VFG0912 | Protein | 1e-147 | 43 |
| KOX_26315 | YP_005021211.1 | outer membrane usher protein SfmD | VFG0944 | Protein | 6e-142 | 42 |
| KOX_26315 | YP_005021211.1 | outer membrane usher protein SfmD | VFG0446 | Protein | 1e-141 | 42 |
