Gene Information

Name : KOX_24355 (KOX_24355)
Accession : YP_005020825.1
Strain : Klebsiella oxytoca KCTC 1686
Genome accession: NC_016612
Putative virulence/resistance : Unknown
Product : integrase family protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5252187 - 5253455 bp
Length : 1269 bp
Strand : +
Note : COG0582 Integrase

DNA sequence :
ATGTCTCTTAACGACTCAAAAATCCGCAACTTAAAACCATCCGCAAAACCCTTTAAAGTCTCCGATTCCCATGGTCTGTA
TCTGCTGGTTAATCCAGGCGGTTCACGTCTCTGGTATCTCAAATATCGTATCAATAGAAAAGAATCTCGCCTTGGCTTAG
GCGCATACCCTGATGTGTCTTTGGCTGATGCTCGTCAACAGCGTGATGGTATCCGTAAATTGCTGGCGCATAATATCAAT
CCTGCACAACAGCGCTCTGCGGAAAGATCCACTTCCTCGCCAGACAAAACTTTCAAGTATGTGGCACTGGACTGGCATAA
AAGCAACCGAACATGGTCAGAGAACCACGCCTCCCGTCTGCTTGCCAGCATGAACAATCATATATTCCCTGTGATTGGAC
ACTTGCCCGTAGCAGAACTAAAACCTCGTCACTTTATTGACCTGCTAAAAGGCATTGAGCAAAAAGGTCTGCTGGAAGTC
GCAGCACGCACCCGGCAGCATATGTGCAACATCATGCGTCATGCCATACATCAGGAGTTGATAGAGAACAATCCGGCAGC
AAATCTGGAGGGTATCATCTCCCCGCCCGTTAAACGTCACTACCCCGCCCTTCAGTTGGAGCGGCTACCGGAACTGTTGG
CTCGCATTGAGGACTACAAGCAAGGACGAGAGTTAACCCGCCTGGCCGTATTACTCACCCTTCACCTATTCATCCGTTCC
AGCGAGCTTCGTTTCGCCCGTTGGTCTGAGATCGATTTCAAAAATAGAATCTGGACCATTCCTGCCACTCGCGAGGCCAT
CTCCGGTGTCCGCTACTCTGGGCGTGGTGCAAAAATGCGCACTCCACATATCGTTCCACTCTCCCGTCAGTCCATCGCTA
TTCTGAAACAGATACGGGAAATATCCGGGCATCGCGTGCTGATATTCCCCGGTGACCATAATCCGTATAAGCCAATGTGT
GAAAACACCGTCAACAAGGCGTTGCGCCTGATGAGATATGACACAAAAAATGAAATCTGCGGCCACGGATTACGGGCAAT
GGCCTGTAGTGCCCTGATGGAGTCTGGCCTGTGGGCACAGGATGCGGTTGAACGGCAGATGAGTCATCAGGAGCGTAACA
GCGTTCGAGCGGCTTACATCCATAAAGCAGAATATCTCGATTCCCGTAAAGCGATGATGCAATGGTGGTCGGATTATCTG
GATATGTGCAGGAAAGCGTATGCCCCACCTTATATTTGTGGGAAGGAAATCAGTTACACAATGGGATAA

Protein sequence :
MSLNDSKIRNLKPSAKPFKVSDSHGLYLLVNPGGSRLWYLKYRINRKESRLGLGAYPDVSLADARQQRDGIRKLLAHNIN
PAQQRSAERSTSSPDKTFKYVALDWHKSNRTWSENHASRLLASMNNHIFPVIGHLPVAELKPRHFIDLLKGIEQKGLLEV
AARTRQHMCNIMRHAIHQELIENNPAANLEGIISPPVKRHYPALQLERLPELLARIEDYKQGRELTRLAVLLTLHLFIRS
SELRFARWSEIDFKNRIWTIPATREAISGVRYSGRGAKMRTPHIVPLSRQSIAILKQIREISGHRVLIFPGDHNPYKPMC
ENTVNKALRLMRYDTKNEICGHGLRAMACSALMESGLWAQDAVERQMSHQERNSVRAAYIHKAEYLDSRKAMMQWWSDYL
DMCRKAYAPPYICGKEISYTMG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
int CAB59974.1 integrase Not tested HPI Protein 4e-159 81
int CAA08754.1 integrase Not tested HPI Protein 3e-159 81
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 4e-115 80
int YP_002346908.1 integrase Not tested HPI Protein 9e-159 80
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 9e-159 80
int2 NP_993013.1 integrase Not tested HPI Protein 9e-159 80
int CAA21384.1 - Not tested HPI Protein 9e-159 80
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 2e-132 80
unnamed AAD17660.1 unknown Not tested HPI Protein 3e-155 79
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 7e-118 59
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 7e-118 59
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 1e-122 57
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 1e-122 57
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 2e-105 55
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 7e-109 52
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 5e-109 52
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 6e-109 52
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 5e-109 52
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 4e-109 52
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 8e-109 52
int AAK00456.1 Int Not tested SHI-1 Protein 2e-101 52
int AAK16198.1 Int Not tested PAI-I AL862 Protein 3e-110 52
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 3e-110 52
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 3e-109 52
int AAL51003.1 CP4-like integrase Not tested LEE Protein 2e-109 52
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 6e-110 52
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 8e-110 52
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 2e-107 52
int AAL51028.1 CP4-like integrase Not tested LEE Protein 6e-110 52
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 8e-110 52
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 2e-108 52
int-phe AAL60261.1 Int-phe Not tested LEE Protein 6e-110 52
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 4e-110 52
int CAC81896.1 integrase Not tested LEE II Protein 4e-102 52
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 5e-109 51
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 9e-101 50
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 2e-93 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
KOX_24355 YP_005020825.1 integrase family protein VFG1536 Protein 1e-105 55
KOX_24355 YP_005020825.1 integrase family protein VFG0626 Protein 2e-109 52
KOX_24355 YP_005020825.1 integrase family protein VFG1693 Protein 9e-109 52