|
Name : KOX_22805 (KOX_22805) Accession : YP_005020518.1 Strain : Klebsiella oxytoca KCTC 1686 Genome accession: NC_016612 Putative virulence/resistance : Virulence Product : outer membrane usher protein LpfC Function : - COG functional category : - COG ID : - EC number : - Position : 4909955 - 4912492 bp Length : 2538 bp Strand : - Note : COG3188 P pilus assembly protein, porin PapC DNA sequence : ATGACAATAAAAAATAATAAGTTGCGACCTGCTCGTCTGGCTACGCTTATCGCCATAGCGTTAACCGGTTTCTCTCCGGA ACTGTATGCCAGTGATTCGTTTAATACGGCCCTGGTAGAGTTAGATAATCCCGGCGTGGGCAAAGCGGATTTATCGGCTT TTGAATCGGGCTCTCAGGCGCCGGGAACATACCATGTGGATATTATTCTTGATGACCAGTTAATGGACACCCGGGATATT CCTTTTTCGATGGCAAAAAACGGGGGTGGTAATGAGGTATTACAGCCCTGTCTGAGCGTGGAACAATTAAAACAGTGGGG AGTGAAAACCGAACTTTTTCCCCAGCTGTCGGTAGAAAATAGTGATTGCGCCAATCTCCAGGCTATTCCGCAAGCCAGCG CTGATTTTCAGTTTGGCGCCCAGCGGCTGGTTATCAGTATTCCCCAGGCGGCGATCGACCTGCCGGCCAGGGGCTATGTA CCGCCGGAAATGTGGGATGAGGGGATTACTGCGGCATTGCTCAATTACAGCCTGAGCGGAGCGAACACTCGGGCGAAAAC GGGCCAGGGCGGCAGAAGCGACAGCCAGTATGCGAACCTGCGTCCGGGGATCAATATCGGACCCTGGCGTTTTCGCAACT ATACCACCTGGTCACGGGAGTCCTCCGGCCAGGATAAATGGGATACCGTTTATACCTATGCGCAGCGGGCCATTATTCCT CTGAAAGCCCAGCTTACCGTTGGCGACAGCTCTGCGCCTGCCGACGTGTTCGACAGTATGCCGTTTCGCGGCGGCCAGTT GGCATCCGATGACGACATGCTGCCGGATTCTCTTAAGGGCTATGCGCCCGTAGTACGCGGCATTGCCCGAACCAATGCGC AGGTCGTGGTGCGCCAGAACGGCTACCAGATCTACCAAAGCTACGTTGCGCCGGGCGCCTTTGAAATCACGGATATGTAT CCTACCGGTGGGGCAGGCGATCTCGACGTGACGATTAAAGAAGCCGATGGCAGCGAACAGCACTTCACGCTGCCCTACGC CTCGCTGCCTGTACTGCAGCGGGAAGCCCGGTTCAAATACGCCATCACCGGCGGGCAGTATCGTTCATATAACAGCAGCG TGGATAAAACCCCTTTCGGGCAGACAACGGCAATTTATGGCCTGCAGCATGGCTTTACCCTCTATGGCGGCCTGCAGGAG TCAAGCAAATATCAGTCGCTGGCATTCGGCGTGGGTAAAAATATGGGGGCGTTAGGCGCTATCTCCACGGATGTCACGCA GGCCTGGTCAACGCCGGATAAAACGGATAAATCGCGCGGCCAATCCTGGCGAGCGCGATACAGCAAAAACTTCATCGATA CCGGGACCAACTTTTCCATTGCGGGATACCGCTATTCCACCAGCGGCTATTACGGGATGCAGGAAGTTCTGGATTCATAT GGAGACAGCAGCGCGCTGCAGGACCGCAGGCGTAACCGCGCGGAGCTGACGATGAGCCAGACGCTGAGCCGCGAACTGGG ATCGCTAACCCTCAGCGCGGCGAGGGAAGATTACTGGAACTCCGCCAGGTCGATGGCTTCCTGGAGCGTCGGATACAACA ACTACTGGCGCAATATCAGCTACGGCCTGACCTGGACATACAGCAAAAATGGTAGCGCGACGTCAAACGACAGCGCGAGT AACAGCGCCCACGACCAGCTGCTGGCGTTTAACGTCAGCGTACCGTTGGATAAATTCCTCCCGCAAACGTGGGCCAGCTA TGGCATGAACGCCAGCAAGAATGGTGGAACGACGCATAATATCGGCATGAACGGCGTCGCGCTGGAGAACAACTCGCTGA ACTGGAACGTCCAGCAGGGTTACGGTACGGATGGCGTGGGTTACACCGGCAATATGAACGGTGACTATAAAGGGACGTAC GGCGAAGTGACGGCGGGGTATAGCTACGACAAAAACAGCGAGCGTCTTAATTATGGTCTGCAGGGGGGCGTTATCGCCCA CGCCGATGGCATCACGCTTTCCCAACCGCTCGGTGAAACCAATGCCCTGATAAAAGCCCCCGGCGCACACGGCGTGAATA TTCGCAACCAACCCGGCGCGCGCACGGACTACCGGGGATATACGGTCGTCAGCAATATTTCCGTCTATCGAAAAAACGAC CTGACGCTCGATCCGCAAAATATGCCTGAGGACGTAGAGCTGGAGATAAACACCGACACGGTTACCCCGACGCGAGGTGC GGTGGTGCGCGCCGATTATCTTTCCAAAGTGGGGCGCAGGGTCCTGATGACCTTAACCGACAATAACCGCTTCGTGCCGT TCGGGGCGGTGGTGACGCTTGCGGATGATAATAAGAGCAGCTTTATCGTTGGCGATCGCGGCCAGGTTTTTTTAAGCGGA ATGCGCGAGCAGGGGGCAATCATCGTCACGTGGGGTCGCGAGTCCAGCCAACAGTGCCGTGCTGATTTCAGCCTGCCGAA ACAATCAACCTACGCTGGAATAACAGAAGTTAGCGCCAGTTGTCACCAGGAACGTTAA Protein sequence : MTIKNNKLRPARLATLIAIALTGFSPELYASDSFNTALVELDNPGVGKADLSAFESGSQAPGTYHVDIILDDQLMDTRDI PFSMAKNGGGNEVLQPCLSVEQLKQWGVKTELFPQLSVENSDCANLQAIPQASADFQFGAQRLVISIPQAAIDLPARGYV PPEMWDEGITAALLNYSLSGANTRAKTGQGGRSDSQYANLRPGINIGPWRFRNYTTWSRESSGQDKWDTVYTYAQRAIIP LKAQLTVGDSSAPADVFDSMPFRGGQLASDDDMLPDSLKGYAPVVRGIARTNAQVVVRQNGYQIYQSYVAPGAFEITDMY PTGGAGDLDVTIKEADGSEQHFTLPYASLPVLQREARFKYAITGGQYRSYNSSVDKTPFGQTTAIYGLQHGFTLYGGLQE SSKYQSLAFGVGKNMGALGAISTDVTQAWSTPDKTDKSRGQSWRARYSKNFIDTGTNFSIAGYRYSTSGYYGMQEVLDSY GDSSALQDRRRNRAELTMSQTLSRELGSLTLSAAREDYWNSARSMASWSVGYNNYWRNISYGLTWTYSKNGSATSNDSAS NSAHDQLLAFNVSVPLDKFLPQTWASYGMNASKNGGTTHNIGMNGVALENNSLNWNVQQGYGTDGVGYTGNMNGDYKGTY GEVTAGYSYDKNSERLNYGLQGGVIAHADGITLSQPLGETNALIKAPGAHGVNIRNQPGARTDYRGYTVVSNISVYRKND LTLDPQNMPEDVELEINTDTVTPTRGAVVRADYLSKVGRRVLMTLTDNNRFVPFGAVVTLADDNKSSFIVGDRGQVFLSG MREQGAIIVTWGRESSQQCRADFSLPKQSTYAGITEVSASCHQER |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| fim2D | AFH78429.1 | putative fimbrial usher protein | Virulence | KpGI-5 | Protein | 2e-142 | 41 |
| lpfC | YP_006098365.1 | fimbrial outer membrane usher protein | Not tested | Tn2411 | Protein | 6e-142 | 41 |
| lpfC | NP_839216.1 | long polar fimbriae | Not tested | SHI-2 | Protein | 1e-142 | 41 |
| lpfC | NP_709462.1 | long polar fimbriae | Not tested | SHI-2 | Protein | 1e-142 | 41 |
| sfaF | CAC16953.2 | SfaF protein | Virulence | PAI III 536 | Protein | 4e-147 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| KOX_22805 | YP_005020518.1 | outer membrane usher protein LpfC | VFG0454 | Protein | 9e-167 | 45 |
| KOX_22805 | YP_005020518.1 | outer membrane usher protein LpfC | VFG0876 | Protein | 3e-155 | 43 |
| KOX_22805 | YP_005020518.1 | outer membrane usher protein LpfC | VFG0446 | Protein | 2e-147 | 43 |
| KOX_22805 | YP_005020518.1 | outer membrane usher protein LpfC | VFG1645 | Protein | 2e-147 | 41 |
| KOX_22805 | YP_005020518.1 | outer membrane usher protein LpfC | VFG0912 | Protein | 8e-147 | 41 |
